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PNLIPRP1 (pancreatic lipase related protein 1)

Identity

Alias_symbol (synonym)PLRP1
Other alias
HGNC (Hugo) PNLIPRP1
LocusID (NCBI) 5407
Atlas_Id 54874
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116591013 and ends at 116609175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA1429 (8q22.1) / PNLIPRP1 (10q25.3)KIAA1429 8q22.1 / PNLIPRP1 10q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNLIPRP1   9156
Cards
Entrez_Gene (NCBI)PNLIPRP1  5407  pancreatic lipase related protein 1
AliasesPLRP1
GeneCards (Weizmann)PNLIPRP1
Ensembl hg19 (Hinxton)ENSG00000187021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187021 [Gene_View]  chr10:116591013-116609175 [Contig_View]  PNLIPRP1 [Vega]
ICGC DataPortalENSG00000187021
TCGA cBioPortalPNLIPRP1
AceView (NCBI)PNLIPRP1
Genatlas (Paris)PNLIPRP1
WikiGenes5407
SOURCE (Princeton)PNLIPRP1
Genetics Home Reference (NIH)PNLIPRP1
Genomic and cartography
GoldenPath hg38 (UCSC)PNLIPRP1  -     chr10:116591013-116609175 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNLIPRP1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblPNLIPRP1 - 10q25.3 [CytoView hg19]  PNLIPRP1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIPNLIPRP1 [Mapview hg19]  PNLIPRP1 [Mapview hg38]
OMIM604422   
Gene and transcription
Genbank (Entrez)AK130236 AK307063 BC005233 BC025784 BP323340
RefSeq transcript (Entrez)NM_001303135 NM_006229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNLIPRP1
Cluster EST : UnigeneHs.73923 [ NCBI ]
CGAP (NCI)Hs.73923
Alternative Splicing GalleryENSG00000187021
Gene ExpressionPNLIPRP1 [ NCBI-GEO ]   PNLIPRP1 [ EBI - ARRAY_EXPRESS ]   PNLIPRP1 [ SEEK ]   PNLIPRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PNLIPRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5407
GTEX Portal (Tissue expression)PNLIPRP1
Human Protein AtlasENSG00000187021-PNLIPRP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54315   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54315  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54315
Splice isoforms : SwissVarP54315
PhosPhoSitePlusP54315
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)    PLAT (PS50095)   
Domains : Interpro (EBI)AB_hydrolase    Lipase/vitellogenin    Lipase_LIPH    Lipase_N    Lipase_panc    PLAT/LH2_dom    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)    PLAT (PF01477)   
Domain families : Pfam (NCBI)pfam00151    pfam01477   
Domain families : Smart (EMBL)LH2 (SM00308)  
Conserved Domain (NCBI)PNLIPRP1
DMDM Disease mutations5407
Blocks (Seattle)PNLIPRP1
PDB (SRS)2PPL   
PDB (PDBSum)2PPL   
PDB (IMB)2PPL   
PDB (RSDB)2PPL   
Structural Biology KnowledgeBase2PPL   
SCOP (Structural Classification of Proteins)2PPL   
CATH (Classification of proteins structures)2PPL   
SuperfamilyP54315
Human Protein Atlas [tissue]ENSG00000187021-PNLIPRP1 [tissue]
Peptide AtlasP54315
HPRD05109
IPIIPI00005923   IPI00386645   IPI00873836   IPI00978463   IPI00979067   IPI00976061   IPI00983709   IPI00977214   IPI00977834   
Protein Interaction databases
DIP (DOE-UCLA)P54315
IntAct (EBI)P54315
FunCoupENSG00000187021
BioGRIDPNLIPRP1
STRING (EMBL)PNLIPRP1
ZODIACPNLIPRP1
Ontologies - Pathways
QuickGOP54315
Ontology : AmiGOtriglyceride lipase activity  calcium ion binding  extracellular region  extracellular space  lipid metabolic process  lipase activity  
Ontology : EGO-EBItriglyceride lipase activity  calcium ion binding  extracellular region  extracellular space  lipid metabolic process  lipase activity  
Pathways : KEGGGlycerolipid metabolism    Pancreatic secretion    Fat digestion and absorption   
NDEx NetworkPNLIPRP1
Atlas of Cancer Signalling NetworkPNLIPRP1
Wikipedia pathwaysPNLIPRP1
Orthology - Evolution
OrthoDB5407
GeneTree (enSembl)ENSG00000187021
Phylogenetic Trees/Animal Genes : TreeFamPNLIPRP1
HOVERGENP54315
HOGENOMP54315
Homologs : HomoloGenePNLIPRP1
Homology/Alignments : Family Browser (UCSC)PNLIPRP1
Gene fusions - Rearrangements
Fusion : MitelmanKIAA1429/PNLIPRP1 [8q22.1/10q25.3]  [t(8;10)(q22;q25)]  
Fusion: TCGA_MDACCKIAA1429 8q22.1 PNLIPRP1 10q25.3 LUAD
Tumor Fusion PortalPNLIPRP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNLIPRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNLIPRP1
dbVarPNLIPRP1
ClinVarPNLIPRP1
1000_GenomesPNLIPRP1 
Exome Variant ServerPNLIPRP1
ExAC (Exome Aggregation Consortium)ENSG00000187021
GNOMAD BrowserENSG00000187021
Genetic variants : HAPMAP5407
Genomic Variants (DGV)PNLIPRP1 [DGVbeta]
DECIPHERPNLIPRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNLIPRP1 
Mutations
ICGC Data PortalPNLIPRP1 
TCGA Data PortalPNLIPRP1 
Broad Tumor PortalPNLIPRP1
OASIS PortalPNLIPRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNLIPRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNLIPRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNLIPRP1
DgiDB (Drug Gene Interaction Database)PNLIPRP1
DoCM (Curated mutations)PNLIPRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNLIPRP1 (select a term)
intoGenPNLIPRP1
Cancer3DPNLIPRP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604422   
Orphanet
DisGeNETPNLIPRP1
MedgenPNLIPRP1
Genetic Testing Registry PNLIPRP1
NextProtP54315 [Medical]
TSGene5407
GENETestsPNLIPRP1
Target ValidationPNLIPRP1
Huge Navigator PNLIPRP1 [HugePedia]
snp3D : Map Gene to Disease5407
BioCentury BCIQPNLIPRP1
ClinGenPNLIPRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5407
Chemical/Pharm GKB GenePA33479
Clinical trialPNLIPRP1
Miscellaneous
canSAR (ICR)PNLIPRP1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNLIPRP1
EVEXPNLIPRP1
GoPubMedPNLIPRP1
iHOPPNLIPRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:29:23 CET 2017

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