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PNLIPRP2 (pancreatic lipase related protein 2 (gene/pseudogene))

Identity

Alias (NCBI)PLRP2
HGNC (Hugo) PNLIPRP2
HGNC Alias symbPLRP2
HGNC Previous namepancreatic lipase related protein 2
LocusID (NCBI) 5408
Atlas_Id 72023
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116620953 and ends at 116645143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PNLIPRP2   9157
Cards
Entrez_Gene (NCBI)PNLIPRP2    pancreatic lipase related protein 2 (gene/pseudogene)
AliasesPLRP2
GeneCards (Weizmann)PNLIPRP2
Ensembl hg19 (Hinxton)ENSG00000266200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266200 [Gene_View]  ENSG00000266200 [Sequence]  chr10:116620953-116645143 [Contig_View]  PNLIPRP2 [Vega]
ICGC DataPortalENSG00000266200
TCGA cBioPortalPNLIPRP2
AceView (NCBI)PNLIPRP2
Genatlas (Paris)PNLIPRP2
SOURCE (Princeton)PNLIPRP2
Genetics Home Reference (NIH)PNLIPRP2
Genomic and cartography
GoldenPath hg38 (UCSC)PNLIPRP2  -     chr10:116620953-116645143 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNLIPRP2  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathPNLIPRP2 - 10q25.3 [CytoView hg19]  PNLIPRP2 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000266200
Genome Data Viewer NCBIPNLIPRP2 [Mapview hg19]  
OMIM604423   
Gene and transcription
Genbank (Entrez)AA367174 AK291492 AK307745 AK308508 AK308511
RefSeq transcript (Entrez)NM_005396
Consensus coding sequences : CCDS (NCBI)PNLIPRP2
Gene ExpressionPNLIPRP2 [ NCBI-GEO ]   PNLIPRP2 [ EBI - ARRAY_EXPRESS ]   PNLIPRP2 [ SEEK ]   PNLIPRP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PNLIPRP2 [ Firebrowse - Broad ]
GenevisibleExpression of PNLIPRP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5408
GTEX Portal (Tissue expression)PNLIPRP2
Human Protein AtlasENSG00000266200-PNLIPRP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54317   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54317  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54317
PhosPhoSitePlusP54317
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)    PLAT (PS50095)   
Domains : Interpro (EBI)AB_hydrolase    Lipase/vitellogenin    Lipase_LIPH    Lipase_N    Lipase_panc    PLAT/LH2_dom    PLAT/LH2_dom_sf    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)    PLAT (PF01477)   
Domain families : Pfam (NCBI)pfam00151    pfam01477   
Domain families : Smart (EMBL)LH2 (SM00308)  
Conserved Domain (NCBI)PNLIPRP2
PDB (RSDB)2OXE    2PVS   
PDB Europe2OXE    2PVS   
PDB (PDBSum)2OXE    2PVS   
PDB (IMB)2OXE    2PVS   
Structural Biology KnowledgeBase2OXE    2PVS   
SCOP (Structural Classification of Proteins)2OXE    2PVS   
CATH (Classification of proteins structures)2OXE    2PVS   
SuperfamilyP54317
AlphaFold pdb e-kbP54317   
Human Protein Atlas [tissue]ENSG00000266200-PNLIPRP2 [tissue]
HPRD05110
Protein Interaction databases
DIP (DOE-UCLA)P54317
IntAct (EBI)P54317
BioGRIDPNLIPRP2
STRING (EMBL)PNLIPRP2
ZODIACPNLIPRP2
Ontologies - Pathways
QuickGOP54317
Ontology : AmiGOphospholipase activity  phospholipase activity  triglyceride lipase activity  triglyceride lipase activity  triglyceride lipase activity  calcium ion binding  extracellular region  extracellular space  extracellular space  triglyceride metabolic process  cellular defense response  phospholipid catabolic process  phospholipid catabolic process  response to bacterium  membrane  lipid catabolic process  lipase activity  galactolipid catabolic process  triglyceride catabolic process  triglyceride catabolic process  phosphatidylcholine catabolic process  lipid digestion  intestinal lipid catabolic process  acylglycerol lipase activity  galactolipase activity  galactolipase activity  1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity  
Ontology : EGO-EBIphospholipase activity  phospholipase activity  triglyceride lipase activity  triglyceride lipase activity  triglyceride lipase activity  calcium ion binding  extracellular region  extracellular space  extracellular space  triglyceride metabolic process  cellular defense response  phospholipid catabolic process  phospholipid catabolic process  response to bacterium  membrane  lipid catabolic process  lipase activity  galactolipid catabolic process  triglyceride catabolic process  triglyceride catabolic process  phosphatidylcholine catabolic process  lipid digestion  intestinal lipid catabolic process  acylglycerol lipase activity  galactolipase activity  galactolipase activity  1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity  
Pathways : KEGGGlycerolipid metabolism   
NDEx NetworkPNLIPRP2
Atlas of Cancer Signalling NetworkPNLIPRP2
Wikipedia pathwaysPNLIPRP2
Orthology - Evolution
OrthoDB5408
GeneTree (enSembl)ENSG00000266200
Phylogenetic Trees/Animal Genes : TreeFamPNLIPRP2
Homologs : HomoloGenePNLIPRP2
Homology/Alignments : Family Browser (UCSC)PNLIPRP2
Gene fusions - Rearrangements
Fusion : QuiverPNLIPRP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNLIPRP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNLIPRP2
dbVarPNLIPRP2
ClinVarPNLIPRP2
MonarchPNLIPRP2
1000_GenomesPNLIPRP2 
Exome Variant ServerPNLIPRP2
GNOMAD BrowserENSG00000266200
Varsome BrowserPNLIPRP2
ACMGPNLIPRP2 variants
VarityP54317
Genomic Variants (DGV)PNLIPRP2 [DGVbeta]
DECIPHERPNLIPRP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNLIPRP2 
Mutations
ICGC Data PortalPNLIPRP2 
TCGA Data PortalPNLIPRP2 
Broad Tumor PortalPNLIPRP2
OASIS PortalPNLIPRP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNLIPRP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPNLIPRP2
Mutations and Diseases : HGMDPNLIPRP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPNLIPRP2
DgiDB (Drug Gene Interaction Database)PNLIPRP2
DoCM (Curated mutations)PNLIPRP2
CIViC (Clinical Interpretations of Variants in Cancer)PNLIPRP2
Cancer3DPNLIPRP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604423   
Orphanet
DisGeNETPNLIPRP2
MedgenPNLIPRP2
Genetic Testing Registry PNLIPRP2
NextProtP54317 [Medical]
GENETestsPNLIPRP2
Target ValidationPNLIPRP2
Huge Navigator PNLIPRP2 [HugePedia]
ClinGenPNLIPRP2
Clinical trials, drugs, therapy
MyCancerGenomePNLIPRP2
Protein Interactions : CTDPNLIPRP2
Pharm GKB GenePA33480
PharosP54317
Clinical trialPNLIPRP2
Miscellaneous
canSAR (ICR)PNLIPRP2
HarmonizomePNLIPRP2
DataMed IndexPNLIPRP2
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPNLIPRP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:16:37 CEST 2021

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