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PNLIPRP3 (pancreatic lipase related protein 3)

Identity

Other alias-
HGNC (Hugo) PNLIPRP3
LocusID (NCBI) 119548
Atlas_Id 51298
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 118187424 and ends at 118237468 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AUTS2 (7q11.22) / PNLIPRP3 (10q25.3)LCOR (10q24.1) / PNLIPRP3 (10q25.3)PNLIPRP3 (10q25.3) / CIRBP (19p13.3)
AUTS2 7q11.22 / PNLIPRP3 10q25.3LCOR 10q24.1 / PNLIPRP3 10q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNLIPRP3   23492
Cards
Entrez_Gene (NCBI)PNLIPRP3  119548  pancreatic lipase related protein 3
Aliases
GeneCards (Weizmann)PNLIPRP3
Ensembl hg19 (Hinxton)ENSG00000203837 [Gene_View]  chr10:118187424-118237468 [Contig_View]  PNLIPRP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203837 [Gene_View]  chr10:118187424-118237468 [Contig_View]  PNLIPRP3 [Vega]
ICGC DataPortalENSG00000203837
TCGA cBioPortalPNLIPRP3
AceView (NCBI)PNLIPRP3
Genatlas (Paris)PNLIPRP3
WikiGenes119548
SOURCE (Princeton)PNLIPRP3
Genetics Home Reference (NIH)PNLIPRP3
Genomic and cartography
GoldenPath hg19 (UCSC)PNLIPRP3  -     chr10:118187424-118237468 +  10q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNLIPRP3  -     10q25.3   [Description]    (hg38-Dec_2013)
EnsemblPNLIPRP3 - 10q25.3 [CytoView hg19]  PNLIPRP3 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIPNLIPRP3 [Mapview hg19]  PNLIPRP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833418 BC015840 BC065752 BC117224 HQ258260
RefSeq transcript (Entrez)NM_001011709
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PNLIPRP3
Cluster EST : UnigeneHs.276724 [ NCBI ]
CGAP (NCI)Hs.276724
Alternative Splicing GalleryENSG00000203837
Gene ExpressionPNLIPRP3 [ NCBI-GEO ]   PNLIPRP3 [ EBI - ARRAY_EXPRESS ]   PNLIPRP3 [ SEEK ]   PNLIPRP3 [ MEM ]
Gene Expression Viewer (FireBrowse)PNLIPRP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119548
GTEX Portal (Tissue expression)PNLIPRP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RR3
Splice isoforms : SwissVarQ17RR3
Catalytic activity : Enzyme3.1.1.3 [ Enzyme-Expasy ]   3.1.1.33.1.1.3 [ IntEnz-EBI ]   3.1.1.3 [ BRENDA ]   3.1.1.3 [ KEGG ]   
PhosPhoSitePlusQ17RR3
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    Lipase_LIPH    Lipase_N    Lipase_panc    PLAT/LH2_dom    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)    PLAT (PF01477)   
Domain families : Pfam (NCBI)pfam00151    pfam01477   
Conserved Domain (NCBI)PNLIPRP3
DMDM Disease mutations119548
Blocks (Seattle)PNLIPRP3
SuperfamilyQ17RR3
Human Protein AtlasENSG00000203837
Peptide AtlasQ17RR3
HPRD18542
IPIIPI00555837   
Protein Interaction databases
DIP (DOE-UCLA)Q17RR3
IntAct (EBI)Q17RR3
FunCoupENSG00000203837
BioGRIDPNLIPRP3
STRING (EMBL)PNLIPRP3
ZODIACPNLIPRP3
Ontologies - Pathways
QuickGOQ17RR3
Ontology : AmiGOtriglyceride lipase activity  extracellular region  lipid catabolic process  
Ontology : EGO-EBItriglyceride lipase activity  extracellular region  lipid catabolic process  
Pathways : KEGGGlycerolipid metabolism   
NDEx NetworkPNLIPRP3
Atlas of Cancer Signalling NetworkPNLIPRP3
Wikipedia pathwaysPNLIPRP3
Orthology - Evolution
OrthoDB119548
GeneTree (enSembl)ENSG00000203837
Phylogenetic Trees/Animal Genes : TreeFamPNLIPRP3
HOVERGENQ17RR3
HOGENOMQ17RR3
Homologs : HomoloGenePNLIPRP3
Homology/Alignments : Family Browser (UCSC)PNLIPRP3
Gene fusions - Rearrangements
Fusion : MitelmanAUTS2/PNLIPRP3 [7q11.22/10q25.3]  [t(7;10)(q11;q25)]  
Fusion : MitelmanLCOR/PNLIPRP3 [10q24.1/10q25.3]  [t(10;10)(q24;q25)]  
Fusion: TCGAAUTS2 7q11.22 PNLIPRP3 10q25.3 OV
Fusion: TCGALCOR 10q24.1 PNLIPRP3 10q25.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNLIPRP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNLIPRP3
dbVarPNLIPRP3
ClinVarPNLIPRP3
1000_GenomesPNLIPRP3 
Exome Variant ServerPNLIPRP3
ExAC (Exome Aggregation Consortium)PNLIPRP3 (select the gene name)
Genetic variants : HAPMAP119548
Genomic Variants (DGV)PNLIPRP3 [DGVbeta]
DECIPHER (Syndromes)10:118187424-118237468  ENSG00000203837
CONAN: Copy Number AnalysisPNLIPRP3 
Mutations
ICGC Data PortalPNLIPRP3 
TCGA Data PortalPNLIPRP3 
Broad Tumor PortalPNLIPRP3
OASIS PortalPNLIPRP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNLIPRP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNLIPRP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNLIPRP3
DgiDB (Drug Gene Interaction Database)PNLIPRP3
DoCM (Curated mutations)PNLIPRP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNLIPRP3 (select a term)
intoGenPNLIPRP3
Cancer3DPNLIPRP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPNLIPRP3
Genetic Testing Registry PNLIPRP3
NextProtQ17RR3 [Medical]
TSGene119548
GENETestsPNLIPRP3
Huge Navigator PNLIPRP3 [HugePedia]
snp3D : Map Gene to Disease119548
BioCentury BCIQPNLIPRP3
ClinGenPNLIPRP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119548
Chemical/Pharm GKB GenePA134954941
Clinical trialPNLIPRP3
Miscellaneous
canSAR (ICR)PNLIPRP3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNLIPRP3
EVEXPNLIPRP3
GoPubMedPNLIPRP3
iHOPPNLIPRP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:53 CEST 2017

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