Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PNMA1 (paraneoplastic Ma antigen 1)

Identity

Other namesMA1
HGNC (Hugo) PNMA1
LocusID (NCBI) 9240
Atlas_Id 41765
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74178486 and ends at 74181128 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PNMA1 (14q24.3) / PNMA1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA1   9158
Cards
Entrez_Gene (NCBI)PNMA1  9240  paraneoplastic Ma antigen 1
AliasesMA1
GeneCards (Weizmann)PNMA1
Ensembl hg19 (Hinxton)ENSG00000176903 [Gene_View]  chr14:74178486-74181128 [Contig_View]  PNMA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176903 [Gene_View]  chr14:74178486-74181128 [Contig_View]  PNMA1 [Vega]
ICGC DataPortalENSG00000176903
TCGA cBioPortalPNMA1
AceView (NCBI)PNMA1
Genatlas (Paris)PNMA1
WikiGenes9240
SOURCE (Princeton)PNMA1
Genomic and cartography
GoldenPath hg19 (UCSC)PNMA1  -     chr14:74178486-74181128 -  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNMA1  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblPNMA1 - 14q24.3 [CytoView hg19]  PNMA1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIPNMA1 [Mapview hg19]  PNMA1 [Mapview hg38]
OMIM604010   
Gene and transcription
Genbank (Entrez)AF320308 AK290980 AL834327 BC007712 BC039577
RefSeq transcript (Entrez)NM_006029
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)PNMA1
Cluster EST : UnigeneHs.194709 [ NCBI ]
CGAP (NCI)Hs.194709
Alternative Splicing GalleryENSG00000176903
Gene ExpressionPNMA1 [ NCBI-GEO ]   PNMA1 [ EBI - ARRAY_EXPRESS ]   PNMA1 [ SEEK ]   PNMA1 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9240
GTEX Portal (Tissue expression)PNMA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND90 (Uniprot)
NextProtQ8ND90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND90
Splice isoforms : SwissVarQ8ND90 (Swissvar)
PhosPhoSitePlusQ8ND90
Domains : Interpro (EBI)PNMA    PNMA1   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
DMDM Disease mutations9240
Blocks (Seattle)PNMA1
SuperfamilyQ8ND90
Human Protein AtlasENSG00000176903
Peptide AtlasQ8ND90
HPRD04926
IPIIPI00005685   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND90
IntAct (EBI)Q8ND90
FunCoupENSG00000176903
BioGRIDPNMA1
STRING (EMBL)PNMA1
ZODIACPNMA1
Ontologies - Pathways
QuickGOQ8ND90
Ontology : AmiGOinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
Ontology : EGO-EBIinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
NDEx Network
Atlas of Cancer Signalling NetworkPNMA1
Wikipedia pathwaysPNMA1
Orthology - Evolution
OrthoDB9240
GeneTree (enSembl)ENSG00000176903
Phylogenetic Trees/Animal Genes : TreeFamPNMA1
Homologs : HomoloGenePNMA1
Homology/Alignments : Family Browser (UCSC)PNMA1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPNMA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA1
dbVarPNMA1
ClinVarPNMA1
1000_GenomesPNMA1 
Exome Variant ServerPNMA1
ExAC (Exome Aggregation Consortium)PNMA1 (select the gene name)
Genetic variants : HAPMAP9240
Genomic Variants (DGV)PNMA1 [DGVbeta]
Mutations
ICGC Data PortalPNMA1 
TCGA Data PortalPNMA1 
Broad Tumor PortalPNMA1
OASIS PortalPNMA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMA1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMA1
DgiDB (Drug Gene Interaction Database)PNMA1
DoCM (Curated mutations)PNMA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA1 (select a term)
intoGenPNMA1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:74178486-74181128  ENSG00000176903
CONAN: Copy Number AnalysisPNMA1 
Mutations and Diseases : HGMDPNMA1
OMIM604010   
MedgenPNMA1
Genetic Testing Registry PNMA1
NextProtQ8ND90 [Medical]
TSGene9240
GENETestsPNMA1
Huge Navigator PNMA1 [HugePedia]
snp3D : Map Gene to Disease9240
BioCentury BCIQPNMA1
ClinGenPNMA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9240
Chemical/Pharm GKB GenePA33481
Clinical trialPNMA1
Miscellaneous
canSAR (ICR)PNMA1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA1
EVEXPNMA1
GoPubMedPNMA1
iHOPPNMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:13:41 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.