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PNMA1 (paraneoplastic Ma antigen 1)

Identity

Other namesMA1
HGNC (Hugo) PNMA1
LocusID (NCBI) 9240
Atlas_Id 41765
Location 14q24.3
Location_base_pair Starts at 74178486 and ends at 74181128 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PNMA1   9158
Cards
Entrez_Gene (NCBI)PNMA1  9240  paraneoplastic Ma antigen 1
GeneCards (Weizmann)PNMA1
Ensembl hg19 (Hinxton)ENSG00000176903 [Gene_View]  chr14:74178486-74181128 [Contig_View]  PNMA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176903 [Gene_View]  chr14:74178486-74181128 [Contig_View]  PNMA1 [Vega]
ICGC DataPortalENSG00000176903
TCGA cBioPortalPNMA1
AceView (NCBI)PNMA1
Genatlas (Paris)PNMA1
WikiGenes9240
SOURCE (Princeton)PNMA1
Genomic and cartography
GoldenPath hg19 (UCSC)PNMA1  -     chr14:74178486-74181128 -  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNMA1  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblPNMA1 - 14q24.3 [CytoView hg19]  PNMA1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIPNMA1 [Mapview hg19]  PNMA1 [Mapview hg38]
OMIM604010   
Gene and transcription
Genbank (Entrez)AF320308 AK290980 AL834327 BC007712 BC039577
RefSeq transcript (Entrez)NM_006029
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)PNMA1
Cluster EST : UnigeneHs.194709 [ NCBI ]
CGAP (NCI)Hs.194709
Alternative Splicing : Fast-db (Paris)GSHG0009479
Alternative Splicing GalleryENSG00000176903
Gene ExpressionPNMA1 [ NCBI-GEO ]     PNMA1 [ SEEK ]   PNMA1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND90 (Uniprot)
NextProtQ8ND90  [Medical]
With graphics : InterProQ8ND90
Splice isoforms : SwissVarQ8ND90 (Swissvar)
Domains : Interpro (EBI)PNMA    PNMA1   
Related proteins : CluSTrQ8ND90
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
DMDM Disease mutations9240
Blocks (Seattle)Q8ND90
Human Protein AtlasENSG00000176903
Peptide AtlasQ8ND90
HPRD04926
IPIIPI00005685   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND90
IntAct (EBI)Q8ND90
FunCoupENSG00000176903
BioGRIDPNMA1
IntegromeDBPNMA1
STRING (EMBL)PNMA1
Ontologies - Pathways
QuickGOQ8ND90
Ontology : AmiGOinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
Ontology : EGO-EBIinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
Protein Interaction DatabasePNMA1
DoCM (Curated mutations)PNMA1
Wikipedia pathwaysPNMA1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerPNMA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA1
dbVarPNMA1
ClinVarPNMA1
1000_GenomesPNMA1 
Exome Variant ServerPNMA1
SNP (GeneSNP Utah)PNMA1
SNP : HGBasePNMA1
Genetic variants : HAPMAPPNMA1
Genomic Variants (DGV)PNMA1 [DGVbeta]
Mutations
ICGC Data PortalPNMA1 
TCGA Data PortalPNMA1 
Tumor PortalPNMA1
Somatic Mutations in Cancer : COSMICPNMA1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:74178486-74181128
CONAN: Copy Number AnalysisPNMA1 
Mutations and Diseases : HGMDPNMA1
OMIM604010   
MedgenPNMA1
NextProtQ8ND90 [Medical]
GENETestsPNMA1
Disease Genetic AssociationPNMA1
Huge Navigator PNMA1 [HugePedia]  PNMA1 [HugeCancerGEM]
snp3D : Map Gene to Disease9240
DGIdb (Drug Gene Interaction db)PNMA1
General knowledge
Homologs : HomoloGenePNMA1
Homology/Alignments : Family Browser (UCSC)PNMA1
Phylogenetic Trees/Animal Genes : TreeFamPNMA1
Chemical/Protein Interactions : CTD9240
Chemical/Pharm GKB GenePA33481
Clinical trialPNMA1
Cancer Resource (Charite)ENSG00000176903
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMinePNMA1
GoPubMedPNMA1
iHOPPNMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:01:11 CEST 2015

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