Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PNMA1 (paraneoplastic Ma antigen 1)

Identity

Other namesMA1
HGNC (Hugo) PNMA1
LocusID (NCBI) 9240
Location 14q24.3
Location_base_pair Starts at 74178486 and ends at 74181128 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PNMA1   9158
Cards
Entrez_Gene (NCBI)PNMA1  9240  paraneoplastic Ma antigen 1
GeneCards (Weizmann)PNMA1
Ensembl (Hinxton)ENSG00000176903 [Gene_View]  chr14:74178486-74181128 [Contig_View]  PNMA1 [Vega]
ICGC DataPortalENSG00000176903
cBioPortalPNMA1
AceView (NCBI)PNMA1
Genatlas (Paris)PNMA1
WikiGenes9240
SOURCE (Princeton)NM_006029
Genomic and cartography
GoldenPath (UCSC)PNMA1  -  14q24.3   chr14:74178486-74181128 -  14q24.3   [Description]    (hg19-Feb_2009)
EnsemblPNMA1 - 14q24.3 [CytoView]
Mapping of homologs : NCBIPNMA1 [Mapview]
OMIM604010   
Gene and transcription
Genbank (Entrez)AF320308 AK290980 AL834327 BC007712 BC039577
RefSeq transcript (Entrez)NM_006029
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)PNMA1
Cluster EST : UnigeneHs.194709 [ NCBI ]
CGAP (NCI)Hs.194709
Alternative Splicing : Fast-db (Paris)GSHG0009479
Alternative Splicing GalleryENSG00000176903
Gene ExpressionPNMA1 [ NCBI-GEO ]     PNMA1 [ SEEK ]   PNMA1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND90 (Uniprot)
NextProtQ8ND90  [Medical]
With graphics : InterProQ8ND90
Splice isoforms : SwissVarQ8ND90 (Swissvar)
Domains : Interpro (EBI)PNMA [organisation]   PNMA1 [organisation]  
Related proteins : CluSTrQ8ND90
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
DMDM Disease mutations9240
Blocks (Seattle)Q8ND90
Human Protein AtlasENSG00000176903 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8ND90
HPRD04926
IPIIPI00005685   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND90
IntAct (EBI)Q8ND90
FunCoupENSG00000176903
BioGRIDPNMA1
InParanoidQ8ND90
Interologous Interaction database Q8ND90
IntegromeDBPNMA1
STRING (EMBL)PNMA1
Ontologies - Pathways
Ontology : AmiGOinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
Ontology : EGO-EBIinflammatory response to antigenic stimulus  protein binding  nucleolus  cytoplasm  focal adhesion  positive regulation of apoptotic process  
Protein Interaction DatabasePNMA1
Wikipedia pathwaysPNMA1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PNMA1
snp3D : Map Gene to Disease9240
SNP (GeneSNP Utah)PNMA1
SNP : HGBasePNMA1
Genetic variants : HAPMAPPNMA1
Exome VariantPNMA1
1000_GenomesPNMA1 
ICGC programENSG00000176903 
Somatic Mutations in Cancer : COSMICPNMA1 
CONAN: Copy Number AnalysisPNMA1 
Mutations and Diseases : HGMDPNMA1
Genomic VariantsPNMA1  PNMA1 [DGVbeta]
dbVarPNMA1
ClinVarPNMA1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604010   
MedgenPNMA1
GENETestsPNMA1
Disease Genetic AssociationPNMA1
Huge Navigator PNMA1 [HugePedia]  PNMA1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePNMA1
Homology/Alignments : Family Browser (UCSC)PNMA1
Phylogenetic Trees/Animal Genes : TreeFamPNMA1
Chemical/Protein Interactions : CTD9240
Chemical/Pharm GKB GenePA33481
Clinical trialPNMA1
Cancer Resource (Charite)ENSG00000176903
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMinePNMA1
iHOPPNMA1
OncoSearchPNMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:43:39 CEST 2014

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