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PNMA2 (paraneoplastic Ma antigen 2)

Identity

Alias_namesparaneoplastic antigen MA2
Alias_symbol (synonym)MA2
RGAG2
Other aliasMM2
HGNC (Hugo) PNMA2
LocusID (NCBI) 10687
Atlas_Id 41766
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 26362196 and ends at 26371483 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PNMA2 (8p21.2) / KIAA0319L (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA2   9159
Cards
Entrez_Gene (NCBI)PNMA2  10687  paraneoplastic Ma antigen 2
AliasesMA2; MM2; RGAG2
GeneCards (Weizmann)PNMA2
Ensembl hg19 (Hinxton)ENSG00000240694 [Gene_View]  chr8:26362196-26371483 [Contig_View]  PNMA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000240694 [Gene_View]  chr8:26362196-26371483 [Contig_View]  PNMA2 [Vega]
ICGC DataPortalENSG00000240694
TCGA cBioPortalPNMA2
AceView (NCBI)PNMA2
Genatlas (Paris)PNMA2
WikiGenes10687
SOURCE (Princeton)PNMA2
Genetics Home Reference (NIH)PNMA2
Genomic and cartography
GoldenPath hg19 (UCSC)PNMA2  -     chr8:26362196-26371483 -  8p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNMA2  -     8p21.2   [Description]    (hg38-Dec_2013)
EnsemblPNMA2 - 8p21.2 [CytoView hg19]  PNMA2 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBIPNMA2 [Mapview hg19]  PNMA2 [Mapview hg38]
OMIM603970   
Gene and transcription
Genbank (Entrez)AA025092 AB020690 AF037365 AF083114 AF083115
RefSeq transcript (Entrez)NM_007257
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)PNMA2
Cluster EST : UnigeneHs.591838 [ NCBI ]
CGAP (NCI)Hs.591838
Alternative Splicing GalleryENSG00000240694
Gene ExpressionPNMA2 [ NCBI-GEO ]   PNMA2 [ EBI - ARRAY_EXPRESS ]   PNMA2 [ SEEK ]   PNMA2 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10687
GTEX Portal (Tissue expression)PNMA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL42
Splice isoforms : SwissVarQ9UL42
PhosPhoSitePlusQ9UL42
Domains : Interpro (EBI)PNMA    PNMA2   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA2
DMDM Disease mutations10687
Blocks (Seattle)PNMA2
SuperfamilyQ9UL42
Human Protein AtlasENSG00000240694
Peptide AtlasQ9UL42
IPIIPI00027028   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL42
IntAct (EBI)Q9UL42
FunCoupENSG00000240694
BioGRIDPNMA2
STRING (EMBL)PNMA2
ZODIACPNMA2
Ontologies - Pathways
QuickGOQ9UL42
Ontology : AmiGOprotein binding  nucleolus  positive regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  nucleolus  positive regulation of apoptotic process  
NDEx NetworkPNMA2
Atlas of Cancer Signalling NetworkPNMA2
Wikipedia pathwaysPNMA2
Orthology - Evolution
OrthoDB10687
GeneTree (enSembl)ENSG00000240694
Phylogenetic Trees/Animal Genes : TreeFamPNMA2
HOVERGENQ9UL42
HOGENOMQ9UL42
Homologs : HomoloGenePNMA2
Homology/Alignments : Family Browser (UCSC)PNMA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA2
dbVarPNMA2
ClinVarPNMA2
1000_GenomesPNMA2 
Exome Variant ServerPNMA2
ExAC (Exome Aggregation Consortium)PNMA2 (select the gene name)
Genetic variants : HAPMAP10687
Genomic Variants (DGV)PNMA2 [DGVbeta]
DECIPHER (Syndromes)8:26362196-26371483  ENSG00000240694
CONAN: Copy Number AnalysisPNMA2 
Mutations
ICGC Data PortalPNMA2 
TCGA Data PortalPNMA2 
Broad Tumor PortalPNMA2
OASIS PortalPNMA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMA2
DgiDB (Drug Gene Interaction Database)PNMA2
DoCM (Curated mutations)PNMA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA2 (select a term)
intoGenPNMA2
Cancer3DPNMA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603970   
Orphanet
MedgenPNMA2
Genetic Testing Registry PNMA2
NextProtQ9UL42 [Medical]
TSGene10687
GENETestsPNMA2
Huge Navigator PNMA2 [HugePedia]
snp3D : Map Gene to Disease10687
BioCentury BCIQPNMA2
ClinGenPNMA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10687
Chemical/Pharm GKB GenePA33482
Clinical trialPNMA2
Miscellaneous
canSAR (ICR)PNMA2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA2
EVEXPNMA2
GoPubMedPNMA2
iHOPPNMA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:53 CEST 2017

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