Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PNMA3 (paraneoplastic Ma antigen 3)

Identity

Alias_namesparaneoplastic antigen MA3
Alias_symbol (synonym)MA5
MA3
MGC132756
MGC132758
Other alias
HGNC (Hugo) PNMA3
LocusID (NCBI) 29944
Atlas_Id 72024
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153056409 and ends at 153060467 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA3   18742
Cards
Entrez_Gene (NCBI)PNMA3  29944  paraneoplastic Ma antigen 3
AliasesMA3; MA5
GeneCards (Weizmann)PNMA3
Ensembl hg19 (Hinxton)ENSG00000183837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183837 [Gene_View]  chrX:153056409-153060467 [Contig_View]  PNMA3 [Vega]
ICGC DataPortalENSG00000183837
TCGA cBioPortalPNMA3
AceView (NCBI)PNMA3
Genatlas (Paris)PNMA3
WikiGenes29944
SOURCE (Princeton)PNMA3
Genetics Home Reference (NIH)PNMA3
Genomic and cartography
GoldenPath hg38 (UCSC)PNMA3  -     chrX:153056409-153060467 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNMA3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblPNMA3 - Xq28 [CytoView hg19]  PNMA3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIPNMA3 [Mapview hg19]  PNMA3 [Mapview hg38]
OMIM300675   
Gene and transcription
Genbank (Entrez)AF083116 AI689415 AK312299 AL136878 BC030761
RefSeq transcript (Entrez)NM_001282535 NM_013364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNMA3
Cluster EST : UnigeneHs.744496 [ NCBI ]
CGAP (NCI)Hs.744496
Alternative Splicing GalleryENSG00000183837
Gene ExpressionPNMA3 [ NCBI-GEO ]   PNMA3 [ EBI - ARRAY_EXPRESS ]   PNMA3 [ SEEK ]   PNMA3 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29944
GTEX Portal (Tissue expression)PNMA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL41   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL41  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL41
Splice isoforms : SwissVarQ9UL41
PhosPhoSitePlusQ9UL41
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)PNMA    PNMA3    Znf_CCHC   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA3
DMDM Disease mutations29944
Blocks (Seattle)PNMA3
SuperfamilyQ9UL41
Human Protein AtlasENSG00000183837
Peptide AtlasQ9UL41
HPRD06677
IPIIPI00002545   IPI00647542   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL41
IntAct (EBI)Q9UL41
FunCoupENSG00000183837
BioGRIDPNMA3
STRING (EMBL)PNMA3
ZODIACPNMA3
Ontologies - Pathways
QuickGOQ9UL41
Ontology : AmiGOnucleic acid binding  nucleolus  zinc ion binding  positive regulation of apoptotic process  
Ontology : EGO-EBInucleic acid binding  nucleolus  zinc ion binding  positive regulation of apoptotic process  
NDEx NetworkPNMA3
Atlas of Cancer Signalling NetworkPNMA3
Wikipedia pathwaysPNMA3
Orthology - Evolution
OrthoDB29944
GeneTree (enSembl)ENSG00000183837
Phylogenetic Trees/Animal Genes : TreeFamPNMA3
HOVERGENQ9UL41
HOGENOMQ9UL41
Homologs : HomoloGenePNMA3
Homology/Alignments : Family Browser (UCSC)PNMA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA3
dbVarPNMA3
ClinVarPNMA3
1000_GenomesPNMA3 
Exome Variant ServerPNMA3
ExAC (Exome Aggregation Consortium)PNMA3 (select the gene name)
Genetic variants : HAPMAP29944
Genomic Variants (DGV)PNMA3 [DGVbeta]
DECIPHERPNMA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNMA3 
Mutations
ICGC Data PortalPNMA3 
TCGA Data PortalPNMA3 
Broad Tumor PortalPNMA3
OASIS PortalPNMA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PNMA3
DgiDB (Drug Gene Interaction Database)PNMA3
DoCM (Curated mutations)PNMA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA3 (select a term)
intoGenPNMA3
Cancer3DPNMA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300675   
Orphanet
MedgenPNMA3
Genetic Testing Registry PNMA3
NextProtQ9UL41 [Medical]
TSGene29944
GENETestsPNMA3
Target ValidationPNMA3
Huge Navigator PNMA3 [HugePedia]
snp3D : Map Gene to Disease29944
BioCentury BCIQPNMA3
ClinGenPNMA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29944
Chemical/Pharm GKB GenePA38667
Clinical trialPNMA3
Miscellaneous
canSAR (ICR)PNMA3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA3
EVEXPNMA3
GoPubMedPNMA3
iHOPPNMA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:34:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.