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PNMA5 (paraneoplastic Ma antigen family member 5)

Identity

Other alias-
HGNC (Hugo) PNMA5
LocusID (NCBI) 114824
Atlas_Id 56876
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152988824 and ends at 152992217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PNMA5 (Xq28) / PPP1R18 (6p21.33)PPP1R18 (6p21.33) / PNMA5 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA5   18743
Cards
Entrez_Gene (NCBI)PNMA5  114824  paraneoplastic Ma antigen family member 5
Aliases
GeneCards (Weizmann)PNMA5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:152988824-152992217 [Contig_View]  PNMA5 [Vega]
TCGA cBioPortalPNMA5
AceView (NCBI)PNMA5
Genatlas (Paris)PNMA5
WikiGenes114824
SOURCE (Princeton)PNMA5
Genetics Home Reference (NIH)PNMA5
Genomic and cartography
GoldenPath hg38 (UCSC)PNMA5  -     chrX:152988824-152992217 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNMA5  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblPNMA5 - Xq28 [CytoView hg19]  PNMA5 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIPNMA5 [Mapview hg19]  PNMA5 [Mapview hg38]
OMIM300916   
Gene and transcription
Genbank (Entrez)AA732768 AB067521 AK295446 AK316104 AY121806
RefSeq transcript (Entrez)NM_001103150 NM_001103151 NM_001184924 NM_052926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNMA5
Cluster EST : UnigeneHs.573567 [ NCBI ]
CGAP (NCI)Hs.573567
Gene ExpressionPNMA5 [ NCBI-GEO ]   PNMA5 [ EBI - ARRAY_EXPRESS ]   PNMA5 [ SEEK ]   PNMA5 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114824
GTEX Portal (Tissue expression)PNMA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PV4
Splice isoforms : SwissVarQ96PV4
PhosPhoSitePlusQ96PV4
Domains : Interpro (EBI)PNMA    PNMA5   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA5
DMDM Disease mutations114824
Blocks (Seattle)PNMA5
SuperfamilyQ96PV4
Peptide AtlasQ96PV4
IPIIPI00514588   IPI00643001   
Protein Interaction databases
DIP (DOE-UCLA)Q96PV4
IntAct (EBI)Q96PV4
BioGRIDPNMA5
STRING (EMBL)PNMA5
ZODIACPNMA5
Ontologies - Pathways
QuickGOQ96PV4
Ontology : AmiGOprotein binding  identical protein binding  positive regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  identical protein binding  positive regulation of apoptotic process  
NDEx NetworkPNMA5
Atlas of Cancer Signalling NetworkPNMA5
Wikipedia pathwaysPNMA5
Orthology - Evolution
OrthoDB114824
Phylogenetic Trees/Animal Genes : TreeFamPNMA5
HOVERGENQ96PV4
HOGENOMQ96PV4
Homologs : HomoloGenePNMA5
Homology/Alignments : Family Browser (UCSC)PNMA5
Gene fusions - Rearrangements
Tumor Fusion PortalPNMA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA5
dbVarPNMA5
ClinVarPNMA5
1000_GenomesPNMA5 
Exome Variant ServerPNMA5
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP114824
Genomic Variants (DGV)PNMA5 [DGVbeta]
DECIPHERPNMA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNMA5 
Mutations
ICGC Data PortalPNMA5 
TCGA Data PortalPNMA5 
Broad Tumor PortalPNMA5
OASIS PortalPNMA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMA5
BioMutasearch PNMA5
DgiDB (Drug Gene Interaction Database)PNMA5
DoCM (Curated mutations)PNMA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA5 (select a term)
intoGenPNMA5
Cancer3DPNMA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300916   
Orphanet
DisGeNETPNMA5
MedgenPNMA5
Genetic Testing Registry PNMA5
NextProtQ96PV4 [Medical]
TSGene114824
GENETestsPNMA5
Target ValidationPNMA5
Huge Navigator PNMA5 [HugePedia]
snp3D : Map Gene to Disease114824
BioCentury BCIQPNMA5
ClinGenPNMA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114824
Chemical/Pharm GKB GenePA38668
Clinical trialPNMA5
Miscellaneous
canSAR (ICR)PNMA5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA5
EVEXPNMA5
GoPubMedPNMA5
iHOPPNMA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:29:24 CET 2017

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