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PNMA6A (paraneoplastic Ma antigen family member 6A)

Identity

Alias_namesPNMA6C
paraneoplastic antigen like 6A
paraneoplastic Ma antigen family member 6C
paraneoplastic antigen like 6C
Alias_symbol (synonym)MGC15827
Other aliasMA6
PNMA6
HGNC (Hugo) PNMA6A
LocusID (NCBI) 84968
Atlas_Id 72026
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153072414 and ends at 153075019 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA6A   28248
Cards
Entrez_Gene (NCBI)PNMA6A  84968  paraneoplastic Ma antigen family member 6A
AliasesMA6; PNMA6; PNMA6C
GeneCards (Weizmann)PNMA6A
Ensembl hg19 (Hinxton)ENSG00000235961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235961 [Gene_View]  chrX:153072414-153075019 [Contig_View]  PNMA6A [Vega]
ICGC DataPortalENSG00000235961
TCGA cBioPortalPNMA6A
AceView (NCBI)PNMA6A
Genatlas (Paris)PNMA6A
WikiGenes84968
SOURCE (Princeton)PNMA6A
Genetics Home Reference (NIH)PNMA6A
Genomic and cartography
GoldenPath hg38 (UCSC)PNMA6A  -     chrX:153072414-153075019 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNMA6A  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblPNMA6A - Xq28 [CytoView hg19]  PNMA6A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIPNMA6A [Mapview hg19]  PNMA6A [Mapview hg38]
OMIM300917   
Gene and transcription
Genbank (Entrez)AK055322 AK289879 AM393296 BC007631 BF508272
RefSeq transcript (Entrez)NM_032882
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNMA6A
Cluster EST : UnigeneHs.721963 [ NCBI ]
CGAP (NCI)Hs.721963
Alternative Splicing GalleryENSG00000235961
Gene ExpressionPNMA6A [ NCBI-GEO ]   PNMA6A [ EBI - ARRAY_EXPRESS ]   PNMA6A [ SEEK ]   PNMA6A [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84968
GTEX Portal (Tissue expression)PNMA6A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW24
Splice isoforms : SwissVarP0CW24
PhosPhoSitePlusP0CW24
Domains : Interpro (EBI)PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA6A
DMDM Disease mutations84968
Blocks (Seattle)PNMA6A
SuperfamilyP0CW24
Human Protein AtlasENSG00000235961
Peptide AtlasP0CW24
HPRD06637
Protein Interaction databases
DIP (DOE-UCLA)P0CW24
IntAct (EBI)P0CW24
FunCoupENSG00000235961
BioGRIDPNMA6A
STRING (EMBL)PNMA6A
ZODIACPNMA6A
Ontologies - Pathways
QuickGOP0CW24
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPNMA6A
Atlas of Cancer Signalling NetworkPNMA6A
Wikipedia pathwaysPNMA6A
Orthology - Evolution
OrthoDB84968
GeneTree (enSembl)ENSG00000235961
Phylogenetic Trees/Animal Genes : TreeFamPNMA6A
HOVERGENP0CW24
HOGENOMP0CW24
Homologs : HomoloGenePNMA6A
Homology/Alignments : Family Browser (UCSC)PNMA6A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA6A
dbVarPNMA6A
ClinVarPNMA6A
1000_GenomesPNMA6A 
Exome Variant ServerPNMA6A
ExAC (Exome Aggregation Consortium)PNMA6A (select the gene name)
Genetic variants : HAPMAP84968
Genomic Variants (DGV)PNMA6A [DGVbeta]
DECIPHERPNMA6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNMA6A 
Mutations
ICGC Data PortalPNMA6A 
TCGA Data PortalPNMA6A 
Broad Tumor PortalPNMA6A
OASIS PortalPNMA6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMA6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMA6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PNMA6A
DgiDB (Drug Gene Interaction Database)PNMA6A
DoCM (Curated mutations)PNMA6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA6A (select a term)
intoGenPNMA6A
Cancer3DPNMA6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300917   
Orphanet
MedgenPNMA6A
Genetic Testing Registry PNMA6A
NextProtP0CW24 [Medical]
TSGene84968
GENETestsPNMA6A
Target ValidationPNMA6A
Huge Navigator PNMA6A [HugePedia]
snp3D : Map Gene to Disease84968
BioCentury BCIQPNMA6A
ClinGenPNMA6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84968
Chemical/Pharm GKB GenePA134880085
Clinical trialPNMA6A
Miscellaneous
canSAR (ICR)PNMA6A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA6A
EVEXPNMA6A
GoPubMedPNMA6A
iHOPPNMA6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:46 CEST 2017

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