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PNMA8A (paraneoplastic Ma antigen family member 8A)

Identity

Alias_namesPNMAL1
PNMA-like 1
paraneoplastic Ma antigen family like 1
Alias_symbol (synonym)KIAA1183L
FLJ10781
Other alias
HGNC (Hugo) PNMA8A
LocusID (NCBI) 55228
Atlas_Id 79895
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46466491 and ends at 46471563 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA8A   25578
Cards
Entrez_Gene (NCBI)PNMA8A  55228  paraneoplastic Ma antigen family member 8A
AliasesPNMAL1
GeneCards (Weizmann)PNMA8A
Ensembl hg19 (Hinxton)ENSG00000182013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182013 [Gene_View]  chr19:46466491-46471563 [Contig_View]  PNMA8A [Vega]
ICGC DataPortalENSG00000182013
TCGA cBioPortalPNMA8A
AceView (NCBI)PNMA8A
Genatlas (Paris)PNMA8A
WikiGenes55228
SOURCE (Princeton)PNMA8A
Genetics Home Reference (NIH)PNMA8A
Genomic and cartography
GoldenPath hg38 (UCSC)PNMA8A  -     chr19:46466491-46471563 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNMA8A  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblPNMA8A - 19q13.32 [CytoView hg19]  PNMA8A - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPNMA8A [Mapview hg19]  PNMA8A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001643 AK096326 AK290218 AL834344 AM392614
RefSeq transcript (Entrez)NM_001103149 NM_018215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNMA8A
Cluster EST : UnigeneHs.8395 [ NCBI ]
CGAP (NCI)Hs.8395
Alternative Splicing GalleryENSG00000182013
Gene ExpressionPNMA8A [ NCBI-GEO ]   PNMA8A [ EBI - ARRAY_EXPRESS ]   PNMA8A [ SEEK ]   PNMA8A [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA8A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55228
GTEX Portal (Tissue expression)PNMA8A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V59
Splice isoforms : SwissVarQ86V59
PhosPhoSitePlusQ86V59
Domains : Interpro (EBI)PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA8A
DMDM Disease mutations55228
Blocks (Seattle)PNMA8A
SuperfamilyQ86V59
Human Protein AtlasENSG00000182013
Peptide AtlasQ86V59
IPIIPI00477223   IPI00328629   IPI00888348   IPI00941705   
Protein Interaction databases
DIP (DOE-UCLA)Q86V59
IntAct (EBI)Q86V59
FunCoupENSG00000182013
BioGRIDPNMA8A
STRING (EMBL)PNMA8A
ZODIACPNMA8A
Ontologies - Pathways
QuickGOQ86V59
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPNMA8A
Atlas of Cancer Signalling NetworkPNMA8A
Wikipedia pathwaysPNMA8A
Orthology - Evolution
OrthoDB55228
GeneTree (enSembl)ENSG00000182013
Phylogenetic Trees/Animal Genes : TreeFamPNMA8A
HOVERGENQ86V59
HOGENOMQ86V59
Homologs : HomoloGenePNMA8A
Homology/Alignments : Family Browser (UCSC)PNMA8A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA8A
dbVarPNMA8A
ClinVarPNMA8A
1000_GenomesPNMA8A 
Exome Variant ServerPNMA8A
ExAC (Exome Aggregation Consortium)PNMA8A (select the gene name)
Genetic variants : HAPMAP55228
Genomic Variants (DGV)PNMA8A [DGVbeta]
DECIPHERPNMA8A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNMA8A 
Mutations
ICGC Data PortalPNMA8A 
TCGA Data PortalPNMA8A 
Broad Tumor PortalPNMA8A
OASIS PortalPNMA8A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPNMA8A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMA8A
DgiDB (Drug Gene Interaction Database)PNMA8A
DoCM (Curated mutations)PNMA8A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA8A (select a term)
intoGenPNMA8A
Cancer3DPNMA8A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPNMA8A
Genetic Testing Registry PNMA8A
NextProtQ86V59 [Medical]
TSGene55228
GENETestsPNMA8A
Target ValidationPNMA8A
Huge Navigator PNMA8A [HugePedia]
snp3D : Map Gene to Disease55228
BioCentury BCIQPNMA8A
ClinGenPNMA8A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55228
Chemical/Pharm GKB GenePA162399835
Clinical trialPNMA8A
Miscellaneous
canSAR (ICR)PNMA8A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA8A
EVEXPNMA8A
GoPubMedPNMA8A
iHOPPNMA8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:51 CEST 2017

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