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PNMA8B (paraneoplastic Ma antigen family member 8B)

Identity

Alias_namesPNMAL2
PNMA-like 2
paraneoplastic Ma antigen family like 2
Alias_symbol (synonym)KIAA1183
Other alias
HGNC (Hugo) PNMA8B
LocusID (NCBI) 57469
Atlas_Id 79668
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46491191 and ends at 46495912 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMA8B   29206
Cards
Entrez_Gene (NCBI)PNMA8B  57469  paraneoplastic Ma antigen family member 8B
AliasesPNMAL2
GeneCards (Weizmann)PNMA8B
Ensembl hg19 (Hinxton)ENSG00000204851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204851 [Gene_View]  chr19:46491191-46495912 [Contig_View]  PNMA8B [Vega]
ICGC DataPortalENSG00000204851
TCGA cBioPortalPNMA8B
AceView (NCBI)PNMA8B
Genatlas (Paris)PNMA8B
WikiGenes57469
SOURCE (Princeton)PNMA8B
Genetics Home Reference (NIH)PNMA8B
Genomic and cartography
GoldenPath hg38 (UCSC)PNMA8B  -     chr19:46491191-46495912 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNMA8B  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblPNMA8B - 19q13.32 [CytoView hg19]  PNMA8B - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPNMA8B [Mapview hg19]  PNMA8B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033009 AK124720 BC121810 BC122520 BC166688
RefSeq transcript (Entrez)NM_020709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNMA8B
Cluster EST : UnigeneHs.7193 [ NCBI ]
CGAP (NCI)Hs.7193
Alternative Splicing GalleryENSG00000204851
Gene ExpressionPNMA8B [ NCBI-GEO ]   PNMA8B [ EBI - ARRAY_EXPRESS ]   PNMA8B [ SEEK ]   PNMA8B [ MEM ]
Gene Expression Viewer (FireBrowse)PNMA8B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57469
GTEX Portal (Tissue expression)PNMA8B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULN7
Splice isoforms : SwissVarQ9ULN7
PhosPhoSitePlusQ9ULN7
Domains : Interpro (EBI)PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMA8B
DMDM Disease mutations57469
Blocks (Seattle)PNMA8B
SuperfamilyQ9ULN7
Human Protein AtlasENSG00000204851
Peptide AtlasQ9ULN7
IPIIPI00644388   IPI00888999   IPI00888259   IPI00893660   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULN7
IntAct (EBI)Q9ULN7
FunCoupENSG00000204851
BioGRIDPNMA8B
STRING (EMBL)PNMA8B
ZODIACPNMA8B
Ontologies - Pathways
QuickGOQ9ULN7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPNMA8B
Atlas of Cancer Signalling NetworkPNMA8B
Wikipedia pathwaysPNMA8B
Orthology - Evolution
OrthoDB57469
GeneTree (enSembl)ENSG00000204851
Phylogenetic Trees/Animal Genes : TreeFamPNMA8B
HOVERGENQ9ULN7
HOGENOMQ9ULN7
Homologs : HomoloGenePNMA8B
Homology/Alignments : Family Browser (UCSC)PNMA8B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMA8B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMA8B
dbVarPNMA8B
ClinVarPNMA8B
1000_GenomesPNMA8B 
Exome Variant ServerPNMA8B
ExAC (Exome Aggregation Consortium)PNMA8B (select the gene name)
Genetic variants : HAPMAP57469
Genomic Variants (DGV)PNMA8B [DGVbeta]
DECIPHERPNMA8B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNMA8B 
Mutations
ICGC Data PortalPNMA8B 
TCGA Data PortalPNMA8B 
Broad Tumor PortalPNMA8B
OASIS PortalPNMA8B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPNMA8B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMA8B
DgiDB (Drug Gene Interaction Database)PNMA8B
DoCM (Curated mutations)PNMA8B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMA8B (select a term)
intoGenPNMA8B
Cancer3DPNMA8B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPNMA8B
Genetic Testing Registry PNMA8B
NextProtQ9ULN7 [Medical]
TSGene57469
GENETestsPNMA8B
Target ValidationPNMA8B
Huge Navigator PNMA8B [HugePedia]
snp3D : Map Gene to Disease57469
BioCentury BCIQPNMA8B
ClinGenPNMA8B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57469
Chemical/Pharm GKB GenePA162399847
Clinical trialPNMA8B
Miscellaneous
canSAR (ICR)PNMA8B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMA8B
EVEXPNMA8B
GoPubMedPNMA8B
iHOPPNMA8B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:51 CEST 2017

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