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PNMAL1 (paraneoplastic Ma antigen family-like 1)

Identity

Alias_namesPNMA-like 1
Alias_symbol (synonym)KIAA1183L
FLJ10781
Other alias-
HGNC (Hugo) PNMAL1
LocusID (NCBI) 55228
Atlas_Id 72027
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46969748 and ends at 46974820 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMAL1   25578
Cards
Entrez_Gene (NCBI)PNMAL1  55228  paraneoplastic Ma antigen family-like 1
Aliases
GeneCards (Weizmann)PNMAL1
Ensembl hg19 (Hinxton)ENSG00000182013 [Gene_View]  chr19:46969748-46974820 [Contig_View]  PNMAL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182013 [Gene_View]  chr19:46969748-46974820 [Contig_View]  PNMAL1 [Vega]
ICGC DataPortalENSG00000182013
TCGA cBioPortalPNMAL1
AceView (NCBI)PNMAL1
Genatlas (Paris)PNMAL1
WikiGenes55228
SOURCE (Princeton)PNMAL1
Genetics Home Reference (NIH)PNMAL1
Genomic and cartography
GoldenPath hg19 (UCSC)PNMAL1  -     chr19:46969748-46974820 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNMAL1  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblPNMAL1 - 19q13.32 [CytoView hg19]  PNMAL1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPNMAL1 [Mapview hg19]  PNMAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001643 AK096326 AK290218 AL834344 AM392614
RefSeq transcript (Entrez)NM_001103149 NM_018215
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PNMAL1
Cluster EST : UnigeneHs.8395 [ NCBI ]
CGAP (NCI)Hs.8395
Alternative Splicing GalleryENSG00000182013
Gene ExpressionPNMAL1 [ NCBI-GEO ]   PNMAL1 [ EBI - ARRAY_EXPRESS ]   PNMAL1 [ SEEK ]   PNMAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55228
GTEX Portal (Tissue expression)PNMAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V59
Splice isoforms : SwissVarQ86V59
PhosPhoSitePlusQ86V59
Domains : Interpro (EBI)PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMAL1
DMDM Disease mutations55228
Blocks (Seattle)PNMAL1
SuperfamilyQ86V59
Human Protein AtlasENSG00000182013
Peptide AtlasQ86V59
HPRD08552
IPIIPI00477223   IPI00328629   IPI00888348   IPI00941705   
Protein Interaction databases
DIP (DOE-UCLA)Q86V59
IntAct (EBI)Q86V59
FunCoupENSG00000182013
BioGRIDPNMAL1
STRING (EMBL)PNMAL1
ZODIACPNMAL1
Ontologies - Pathways
QuickGOQ86V59
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPNMAL1
Atlas of Cancer Signalling NetworkPNMAL1
Wikipedia pathwaysPNMAL1
Orthology - Evolution
OrthoDB55228
GeneTree (enSembl)ENSG00000182013
Phylogenetic Trees/Animal Genes : TreeFamPNMAL1
HOVERGENQ86V59
HOGENOMQ86V59
Homologs : HomoloGenePNMAL1
Homology/Alignments : Family Browser (UCSC)PNMAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMAL1
dbVarPNMAL1
ClinVarPNMAL1
1000_GenomesPNMAL1 
Exome Variant ServerPNMAL1
ExAC (Exome Aggregation Consortium)PNMAL1 (select the gene name)
Genetic variants : HAPMAP55228
Genomic Variants (DGV)PNMAL1 [DGVbeta]
DECIPHER (Syndromes)19:46969748-46974820  ENSG00000182013
CONAN: Copy Number AnalysisPNMAL1 
Mutations
ICGC Data PortalPNMAL1 
TCGA Data PortalPNMAL1 
Broad Tumor PortalPNMAL1
OASIS PortalPNMAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMAL1
DgiDB (Drug Gene Interaction Database)PNMAL1
DoCM (Curated mutations)PNMAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMAL1 (select a term)
intoGenPNMAL1
Cancer3DPNMAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPNMAL1
Genetic Testing Registry PNMAL1
NextProtQ86V59 [Medical]
TSGene55228
GENETestsPNMAL1
Huge Navigator PNMAL1 [HugePedia]
snp3D : Map Gene to Disease55228
BioCentury BCIQPNMAL1
ClinGenPNMAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55228
Chemical/Pharm GKB GenePA162399835
Clinical trialPNMAL1
Miscellaneous
canSAR (ICR)PNMAL1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMAL1
EVEXPNMAL1
GoPubMedPNMAL1
iHOPPNMAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:03 CET 2017

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