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PNMAL2 (paraneoplastic Ma antigen family-like 2)

Identity

Alias_namesPNMA-like 2
Alias_symbol (synonym)KIAA1183
Other alias-
HGNC (Hugo) PNMAL2
LocusID (NCBI) 57469
Atlas_Id 72028
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46994448 and ends at 46999169 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNMAL2   29206
Cards
Entrez_Gene (NCBI)PNMAL2  57469  paraneoplastic Ma antigen family-like 2
Aliases
GeneCards (Weizmann)PNMAL2
Ensembl hg19 (Hinxton)ENSG00000204851 [Gene_View]  chr19:46994448-46999169 [Contig_View]  PNMAL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204851 [Gene_View]  chr19:46994448-46999169 [Contig_View]  PNMAL2 [Vega]
ICGC DataPortalENSG00000204851
TCGA cBioPortalPNMAL2
AceView (NCBI)PNMAL2
Genatlas (Paris)PNMAL2
WikiGenes57469
SOURCE (Princeton)PNMAL2
Genetics Home Reference (NIH)PNMAL2
Genomic and cartography
GoldenPath hg19 (UCSC)PNMAL2  -     chr19:46994448-46999169 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PNMAL2  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblPNMAL2 - 19q13.32 [CytoView hg19]  PNMAL2 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIPNMAL2 [Mapview hg19]  PNMAL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033009 AK124720 BC121810 BC122520 BC166688
RefSeq transcript (Entrez)NM_020709
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PNMAL2
Cluster EST : UnigeneHs.7193 [ NCBI ]
CGAP (NCI)Hs.7193
Alternative Splicing GalleryENSG00000204851
Gene ExpressionPNMAL2 [ NCBI-GEO ]   PNMAL2 [ EBI - ARRAY_EXPRESS ]   PNMAL2 [ SEEK ]   PNMAL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PNMAL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57469
GTEX Portal (Tissue expression)PNMAL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULN7
Splice isoforms : SwissVarQ9ULN7
PhosPhoSitePlusQ9ULN7
Domains : Interpro (EBI)PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)PNMAL2
DMDM Disease mutations57469
Blocks (Seattle)PNMAL2
SuperfamilyQ9ULN7
Human Protein AtlasENSG00000204851
Peptide AtlasQ9ULN7
IPIIPI00644388   IPI00888999   IPI00888259   IPI00893660   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULN7
IntAct (EBI)Q9ULN7
FunCoupENSG00000204851
BioGRIDPNMAL2
STRING (EMBL)PNMAL2
ZODIACPNMAL2
Ontologies - Pathways
QuickGOQ9ULN7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPNMAL2
Atlas of Cancer Signalling NetworkPNMAL2
Wikipedia pathwaysPNMAL2
Orthology - Evolution
OrthoDB57469
GeneTree (enSembl)ENSG00000204851
Phylogenetic Trees/Animal Genes : TreeFamPNMAL2
HOVERGENQ9ULN7
HOGENOMQ9ULN7
Homologs : HomoloGenePNMAL2
Homology/Alignments : Family Browser (UCSC)PNMAL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNMAL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNMAL2
dbVarPNMAL2
ClinVarPNMAL2
1000_GenomesPNMAL2 
Exome Variant ServerPNMAL2
ExAC (Exome Aggregation Consortium)PNMAL2 (select the gene name)
Genetic variants : HAPMAP57469
Genomic Variants (DGV)PNMAL2 [DGVbeta]
DECIPHER (Syndromes)19:46994448-46999169  ENSG00000204851
CONAN: Copy Number AnalysisPNMAL2 
Mutations
ICGC Data PortalPNMAL2 
TCGA Data PortalPNMAL2 
Broad Tumor PortalPNMAL2
OASIS PortalPNMAL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNMAL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNMAL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNMAL2
DgiDB (Drug Gene Interaction Database)PNMAL2
DoCM (Curated mutations)PNMAL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNMAL2 (select a term)
intoGenPNMAL2
Cancer3DPNMAL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPNMAL2
Genetic Testing Registry PNMAL2
NextProtQ9ULN7 [Medical]
TSGene57469
GENETestsPNMAL2
Huge Navigator PNMAL2 [HugePedia]
snp3D : Map Gene to Disease57469
BioCentury BCIQPNMAL2
ClinGenPNMAL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57469
Chemical/Pharm GKB GenePA162399847
Clinical trialPNMAL2
Miscellaneous
canSAR (ICR)PNMAL2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNMAL2
EVEXPNMAL2
GoPubMedPNMAL2
iHOPPNMAL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:04 CET 2017

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