Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PNO1 (partner of NOB1 homolog)

Identity

Alias_namesKHRBP1
KH-type RNA binding protein 1
KH-type RNA-binding protein 1
partner of NOB1 homolog (S. cerevisiae)
Alias_symbol (synonym)RRP20
Other alias
HGNC (Hugo) PNO1
LocusID (NCBI) 56902
Atlas_Id 72029
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 68157830 and ends at 68176238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAAP20 (1p36.33) / PNO1 (2p14)GRHPR (9p13.2) / PNO1 (2p14)METTL2A (17q23.2) / PNO1 (2p14)
PNO1 (2p14) / ITPKB (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNO1   32790
Cards
Entrez_Gene (NCBI)PNO1  56902  partner of NOB1 homolog
AliasesKHRBP1; RRP20
GeneCards (Weizmann)PNO1
Ensembl hg19 (Hinxton)ENSG00000115946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115946 [Gene_View]  chr2:68157830-68176238 [Contig_View]  PNO1 [Vega]
ICGC DataPortalENSG00000115946
TCGA cBioPortalPNO1
AceView (NCBI)PNO1
Genatlas (Paris)PNO1
WikiGenes56902
SOURCE (Princeton)PNO1
Genetics Home Reference (NIH)PNO1
Genomic and cartography
GoldenPath hg38 (UCSC)PNO1  -     chr2:68157830-68176238 +  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNO1  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblPNO1 - 2p14 [CytoView hg19]  PNO1 - 2p14 [CytoView hg38]
Mapping of homologs : NCBIPNO1 [Mapview hg19]  PNO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF164799 AF349314 AK223118 AK225641 AK291715
RefSeq transcript (Entrez)NM_001329916 NM_001329917 NM_020143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNO1
Cluster EST : UnigeneHs.262858 [ NCBI ]
CGAP (NCI)Hs.262858
Alternative Splicing GalleryENSG00000115946
Gene ExpressionPNO1 [ NCBI-GEO ]   PNO1 [ EBI - ARRAY_EXPRESS ]   PNO1 [ SEEK ]   PNO1 [ MEM ]
Gene Expression Viewer (FireBrowse)PNO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56902
GTEX Portal (Tissue expression)PNO1
Human Protein AtlasENSG00000115946-PNO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX1
Splice isoforms : SwissVarQ9NRX1
PhosPhoSitePlusQ9NRX1
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)PNO1
DMDM Disease mutations56902
Blocks (Seattle)PNO1
SuperfamilyQ9NRX1
Human Protein Atlas [tissue]ENSG00000115946-PNO1 [tissue]
Peptide AtlasQ9NRX1
HPRD14250
IPIIPI00024524   IPI00915874   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX1
IntAct (EBI)Q9NRX1
FunCoupENSG00000115946
BioGRIDPNO1
STRING (EMBL)PNO1
ZODIACPNO1
Ontologies - Pathways
QuickGOQ9NRX1
Ontology : AmiGORNA binding  nucleus  nucleoplasm  nucleolus  cytosol  rRNA processing  
Ontology : EGO-EBIRNA binding  nucleus  nucleoplasm  nucleolus  cytosol  rRNA processing  
NDEx NetworkPNO1
Atlas of Cancer Signalling NetworkPNO1
Wikipedia pathwaysPNO1
Orthology - Evolution
OrthoDB56902
GeneTree (enSembl)ENSG00000115946
Phylogenetic Trees/Animal Genes : TreeFamPNO1
HOVERGENQ9NRX1
HOGENOMQ9NRX1
Homologs : HomoloGenePNO1
Homology/Alignments : Family Browser (UCSC)PNO1
Gene fusions - Rearrangements
Tumor Fusion PortalPNO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNO1
dbVarPNO1
ClinVarPNO1
1000_GenomesPNO1 
Exome Variant ServerPNO1
ExAC (Exome Aggregation Consortium)ENSG00000115946
GNOMAD BrowserENSG00000115946
Genetic variants : HAPMAP56902
Genomic Variants (DGV)PNO1 [DGVbeta]
DECIPHERPNO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNO1 
Mutations
ICGC Data PortalPNO1 
TCGA Data PortalPNO1 
Broad Tumor PortalPNO1
OASIS PortalPNO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNO1
DgiDB (Drug Gene Interaction Database)PNO1
DoCM (Curated mutations)PNO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNO1 (select a term)
intoGenPNO1
Cancer3DPNO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPNO1
MedgenPNO1
Genetic Testing Registry PNO1
NextProtQ9NRX1 [Medical]
TSGene56902
GENETestsPNO1
Target ValidationPNO1
Huge Navigator PNO1 [HugePedia]
snp3D : Map Gene to Disease56902
BioCentury BCIQPNO1
ClinGenPNO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56902
Chemical/Pharm GKB GenePA162399854
Clinical trialPNO1
Miscellaneous
canSAR (ICR)PNO1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNO1
EVEXPNO1
GoPubMedPNO1
iHOPPNO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:03 CET 2017

Home   Genes   L%ukgmias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.