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PNPO (pyridoxamine 5'-phosphate oxidase)

Identity

Other namesHEL-S-302
PDXPO
HGNC (Hugo) PNPO
LocusID (NCBI) 55163
Location 17q21.32
Location_base_pair Starts at 46018889 and ends at 46026674 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PNPO   30260
Cards
Entrez_Gene (NCBI)PNPO  55163  pyridoxamine 5'-phosphate oxidase
GeneCards (Weizmann)PNPO
Ensembl (Hinxton) [Gene_View]  chr17:46018889-46026674 [Contig_View]  PNPO [Vega]
cBioPortalPNPO
AceView (NCBI)PNPO
Genatlas (Paris)PNPO
WikiGenes55163
SOURCE (Princeton)NM_018129
Genomic and cartography
GoldenPath (UCSC)PNPO  -  17q21.32   chr17:46018889-46026674 +  17q21.32   [Description]    (hg19-Feb_2009)
EnsemblPNPO - 17q21.32 [CytoView]
Mapping of homologs : NCBIPNPO [Mapview]
OMIM603287   610090   
Gene and transcription
Genbank (Entrez)AF468030 AK001397 AK223242 AK303536 AK303665
RefSeq transcript (Entrez)NM_018129
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008744 NT_010783 NW_001838448 NW_004929407
Consensus coding sequences : CCDS (NCBI)PNPO
Cluster EST : UnigeneHs.631742 [ NCBI ]
CGAP (NCI)Hs.631742
Alternative Splicing : Fast-db (Paris)GSHG0012594
Gene ExpressionPNPO [ NCBI-GEO ]     PNPO [ SEEK ]   PNPO [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVS9 (Uniprot)
NextProtQ9NVS9  [Medical]
With graphics : InterProQ9NVS9
Splice isoforms : SwissVarQ9NVS9 (Swissvar)
Catalytic activity : Enzyme1.4.3.5 [ Enzyme-Expasy ]   1.4.3.51.4.3.5 [ IntEnz-EBI ]   1.4.3.5 [ BRENDA ]   1.4.3.5 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)PYRIDOX_OXIDASE (PS01064)   
Domains : Interpro (EBI)Pyridox_Oxase [organisation]   Pyridox_Oxase_CS [organisation]   Pyridox_Oxase_FMN-bd [organisation]   Pyridoxamine_oxidase_dimer_C [organisation]   Split_barrel_FMN-bd [organisation]  
Related proteins : CluSTrQ9NVS9
Domain families : Pfam (Sanger)PNPOx_C (PF10590)    Pyridox_oxidase (PF01243)   
Domain families : Pfam (NCBI)pfam10590    pfam01243   
DMDM Disease mutations55163
Blocks (Seattle)Q9NVS9
PDB (SRS)1NRG    3HY8   
PDB (PDBSum)1NRG    3HY8   
PDB (IMB)1NRG    3HY8   
PDB (RSDB)1NRG    3HY8   
Peptide AtlasQ9NVS9
HPRD04476
IPIIPI00018272   IPI00793232   IPI00792667   IPI01013271   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVS9
IntAct (EBI)Q9NVS9
BioGRIDPNPO
InParanoidQ9NVS9
Interologous Interaction database Q9NVS9
IntegromeDBPNPO
STRING (EMBL)PNPO
Ontologies - Pathways
Ontology : AmiGOpyridoxamine-phosphate oxidase activity  cytosol  vitamin metabolic process  water-soluble vitamin metabolic process  pyridoxine biosynthetic process  FMN binding  vitamin B6 metabolic process  pyridoxal phosphate biosynthetic process  small molecule metabolic process  oxidation-reduction process  extracellular vesicular exosome  
Ontology : EGO-EBIpyridoxamine-phosphate oxidase activity  cytosol  vitamin metabolic process  water-soluble vitamin metabolic process  pyridoxine biosynthetic process  FMN binding  vitamin B6 metabolic process  pyridoxal phosphate biosynthetic process  small molecule metabolic process  oxidation-reduction process  extracellular vesicular exosome  
Pathways : KEGGVitamin B6 metabolism   
Protein Interaction DatabasePNPO
Wikipedia pathwaysPNPO
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PNPO
snp3D : Map Gene to Disease55163
SNP (GeneSNP Utah)PNPO
SNP : HGBasePNPO
Genetic variants : HAPMAPPNPO
Exome VariantPNPO
1000_GenomesPNPO 
Somatic Mutations in Cancer : COSMICPNPO 
CONAN: Copy Number AnalysisPNPO 
Mutations and Diseases : HGMDPNPO
Genomic VariantsPNPO  PNPO [DGVbeta]
dbVarPNPO
ClinVarPNPO
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603287    610090   
MedgenPNPO
GENETestsPNPO
Disease Genetic AssociationPNPO
Huge Navigator PNPO [HugePedia]  PNPO [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePNPO
Homology/Alignments : Family Browser (UCSC)PNPO
Phylogenetic Trees/Animal Genes : TreeFamPNPO
Chemical/Protein Interactions : CTD55163
Chemical/Pharm GKB GenePA134915565
Clinical trialPNPO
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMinePNPO
iHOPPNPO
OncoSearchPNPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:10:27 CEST 2014

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