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POC5 (POC5 centriolar protein)

Identity

Alias (NCBI)C5orf37
HGNC (Hugo) POC5
HGNC Alias symbFLJ35779
MGC120442
MGC120443
MGC120444
hPOC5
HGNC Previous nameC5orf37
HGNC Previous namechromosome 5 open reading frame 37
 POC5 centriolar protein homolog (Chlamydomonas)
LocusID (NCBI) 134359
Atlas_Id 72038
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 75674199 and ends at 75712455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)POC5   26658
Cards
Entrez_Gene (NCBI)POC5    POC5 centriolar protein
AliasesC5orf37
GeneCards (Weizmann)POC5
Ensembl hg19 (Hinxton)ENSG00000152359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152359 [Gene_View]  ENSG00000152359 [Sequence]  chr5:75674199-75712455 [Contig_View]  POC5 [Vega]
ICGC DataPortalENSG00000152359
TCGA cBioPortalPOC5
AceView (NCBI)POC5
Genatlas (Paris)POC5
SOURCE (Princeton)POC5
Genetics Home Reference (NIH)POC5
Genomic and cartography
GoldenPath hg38 (UCSC)POC5  -     chr5:75674199-75712455 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POC5  -     5q13.3   [Description]    (hg19-Feb_2009)
GoldenPathPOC5 - 5q13.3 [CytoView hg19]  POC5 - 5q13.3 [CytoView hg38]
ImmunoBaseENSG00000152359
Genome Data Viewer NCBIPOC5 [Mapview hg19]  
OMIM617880   
Gene and transcription
Genbank (Entrez)AK093098 AK296071 AK311296 BC010695 BC050459
RefSeq transcript (Entrez)NM_001099271 NM_152408
Consensus coding sequences : CCDS (NCBI)POC5
Gene ExpressionPOC5 [ NCBI-GEO ]   POC5 [ EBI - ARRAY_EXPRESS ]   POC5 [ SEEK ]   POC5 [ MEM ]
Gene Expression Viewer (FireBrowse)POC5 [ Firebrowse - Broad ]
GenevisibleExpression of POC5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134359
GTEX Portal (Tissue expression)POC5
Human Protein AtlasENSG00000152359-POC5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA72
PhosPhoSitePlusQ8NA72
Domains : Interpro (EBI)POC5   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POC5
SuperfamilyQ8NA72
AlphaFold pdb e-kbQ8NA72   
Human Protein Atlas [tissue]ENSG00000152359-POC5 [tissue]
HPRD08188
Protein Interaction databases
DIP (DOE-UCLA)Q8NA72
IntAct (EBI)Q8NA72
BioGRIDPOC5
STRING (EMBL)POC5
ZODIACPOC5
Ontologies - Pathways
QuickGOQ8NA72
Ontology : AmiGOprotein binding  nucleoplasm  centrosome  centrosome  centriole  cytosol  cell cycle  
Ontology : EGO-EBIprotein binding  nucleoplasm  centrosome  centrosome  centriole  cytosol  cell cycle  
NDEx NetworkPOC5
Atlas of Cancer Signalling NetworkPOC5
Wikipedia pathwaysPOC5
Orthology - Evolution
OrthoDB134359
GeneTree (enSembl)ENSG00000152359
Phylogenetic Trees/Animal Genes : TreeFamPOC5
Homologs : HomoloGenePOC5
Homology/Alignments : Family Browser (UCSC)POC5
Gene fusions - Rearrangements
Fusion : QuiverPOC5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POC5
dbVarPOC5
ClinVarPOC5
MonarchPOC5
1000_GenomesPOC5 
Exome Variant ServerPOC5
GNOMAD BrowserENSG00000152359
Varsome BrowserPOC5
ACMGPOC5 variants
VarityQ8NA72
Genomic Variants (DGV)POC5 [DGVbeta]
DECIPHERPOC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOC5 
Mutations
ICGC Data PortalPOC5 
TCGA Data PortalPOC5 
Broad Tumor PortalPOC5
OASIS PortalPOC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOC5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPOC5
Mutations and Diseases : HGMDPOC5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPOC5
DgiDB (Drug Gene Interaction Database)POC5
DoCM (Curated mutations)POC5
CIViC (Clinical Interpretations of Variants in Cancer)POC5
Cancer3DPOC5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617880   
Orphanet
DisGeNETPOC5
MedgenPOC5
Genetic Testing Registry POC5
NextProtQ8NA72 [Medical]
GENETestsPOC5
Target ValidationPOC5
Huge Navigator POC5 [HugePedia]
ClinGenPOC5
Clinical trials, drugs, therapy
MyCancerGenomePOC5
Protein Interactions : CTDPOC5
Pharm GKB GenePA165660427
PharosQ8NA72
Clinical trialPOC5
Miscellaneous
canSAR (ICR)POC5
HarmonizomePOC5
ARCHS4POC5
DataMed IndexPOC5
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPOC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:20:07 CET 2022

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