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POC5 (POC5 centriolar protein)

Identity

Alias_namesC5orf37
chromosome 5 open reading frame 37
POC5 centriolar protein homolog (Chlamydomonas)
Alias_symbol (synonym)FLJ35779
MGC120442
MGC120443
MGC120444
hPOC5
Other alias
HGNC (Hugo) POC5
LocusID (NCBI) 134359
Atlas_Id 72038
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 75674199 and ends at 75717488 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POC5   26658
Cards
Entrez_Gene (NCBI)POC5  134359  POC5 centriolar protein
AliasesC5orf37
GeneCards (Weizmann)POC5
Ensembl hg19 (Hinxton)ENSG00000152359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152359 [Gene_View]  chr5:75674199-75717488 [Contig_View]  POC5 [Vega]
ICGC DataPortalENSG00000152359
TCGA cBioPortalPOC5
AceView (NCBI)POC5
Genatlas (Paris)POC5
WikiGenes134359
SOURCE (Princeton)POC5
Genetics Home Reference (NIH)POC5
Genomic and cartography
GoldenPath hg38 (UCSC)POC5  -     chr5:75674199-75717488 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POC5  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblPOC5 - 5q13.3 [CytoView hg19]  POC5 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIPOC5 [Mapview hg19]  POC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093098 AK296071 AK311296 BC010695 BC050459
RefSeq transcript (Entrez)NM_001099271 NM_152408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POC5
Cluster EST : UnigeneHs.432726 [ NCBI ]
CGAP (NCI)Hs.432726
Alternative Splicing GalleryENSG00000152359
Gene ExpressionPOC5 [ NCBI-GEO ]   POC5 [ EBI - ARRAY_EXPRESS ]   POC5 [ SEEK ]   POC5 [ MEM ]
Gene Expression Viewer (FireBrowse)POC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134359
GTEX Portal (Tissue expression)POC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA72
Splice isoforms : SwissVarQ8NA72
PhosPhoSitePlusQ8NA72
Domains : Interpro (EBI)POC5   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POC5
DMDM Disease mutations134359
Blocks (Seattle)POC5
SuperfamilyQ8NA72
Human Protein AtlasENSG00000152359
Peptide AtlasQ8NA72
HPRD08188
IPIIPI00176157   IPI00645777   IPI00844438   IPI00967176   IPI00965846   IPI00964403   IPI00964141   IPI00963853   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA72
IntAct (EBI)Q8NA72
FunCoupENSG00000152359
BioGRIDPOC5
STRING (EMBL)POC5
ZODIACPOC5
Ontologies - Pathways
QuickGOQ8NA72
Ontology : AmiGOprotein binding  centrosome  centriole  cell cycle  
Ontology : EGO-EBIprotein binding  centrosome  centriole  cell cycle  
NDEx NetworkPOC5
Atlas of Cancer Signalling NetworkPOC5
Wikipedia pathwaysPOC5
Orthology - Evolution
OrthoDB134359
GeneTree (enSembl)ENSG00000152359
Phylogenetic Trees/Animal Genes : TreeFamPOC5
HOVERGENQ8NA72
HOGENOMQ8NA72
Homologs : HomoloGenePOC5
Homology/Alignments : Family Browser (UCSC)POC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POC5
dbVarPOC5
ClinVarPOC5
1000_GenomesPOC5 
Exome Variant ServerPOC5
ExAC (Exome Aggregation Consortium)POC5 (select the gene name)
Genetic variants : HAPMAP134359
Genomic Variants (DGV)POC5 [DGVbeta]
DECIPHERPOC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOC5 
Mutations
ICGC Data PortalPOC5 
TCGA Data PortalPOC5 
Broad Tumor PortalPOC5
OASIS PortalPOC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POC5
DgiDB (Drug Gene Interaction Database)POC5
DoCM (Curated mutations)POC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POC5 (select a term)
intoGenPOC5
Cancer3DPOC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOC5
Genetic Testing Registry POC5
NextProtQ8NA72 [Medical]
TSGene134359
GENETestsPOC5
Target ValidationPOC5
Huge Navigator POC5 [HugePedia]
snp3D : Map Gene to Disease134359
BioCentury BCIQPOC5
ClinGenPOC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134359
Chemical/Pharm GKB GenePA165660427
Clinical trialPOC5
Miscellaneous
canSAR (ICR)POC5 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOC5
EVEXPOC5
GoPubMedPOC5
iHOPPOC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:53 CEST 2017

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