Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PODN (podocan)

Identity

Alias_symbol (synonym)PCAN
PODOCAN
MGC24995
SLRR5A
Other alias
HGNC (Hugo) PODN
LocusID (NCBI) 127435
Atlas_Id 56269
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53527724 and ends at 53551174 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PIAS3 (1q21.1) / PODN (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PODN   23174
Cards
Entrez_Gene (NCBI)PODN  127435  podocan
AliasesPCAN; SLRR5A
GeneCards (Weizmann)PODN
Ensembl hg19 (Hinxton)ENSG00000174348 [Gene_View]  chr1:53527724-53551174 [Contig_View]  PODN [Vega]
Ensembl hg38 (Hinxton)ENSG00000174348 [Gene_View]  chr1:53527724-53551174 [Contig_View]  PODN [Vega]
ICGC DataPortalENSG00000174348
TCGA cBioPortalPODN
AceView (NCBI)PODN
Genatlas (Paris)PODN
WikiGenes127435
SOURCE (Princeton)PODN
Genetics Home Reference (NIH)PODN
Genomic and cartography
GoldenPath hg19 (UCSC)PODN  -     chr1:53527724-53551174 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PODN  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblPODN - 1p32.3 [CytoView hg19]  PODN - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIPODN [Mapview hg19]  PODN [Mapview hg38]
OMIM608661   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001199080 NM_001199081 NM_001199082 NM_153703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PODN
Cluster EST : UnigeneHs.744361 [ NCBI ]
CGAP (NCI)Hs.744361
Alternative Splicing GalleryENSG00000174348
Gene ExpressionPODN [ NCBI-GEO ]   PODN [ EBI - ARRAY_EXPRESS ]   PODN [ SEEK ]   PODN [ MEM ]
Gene Expression Viewer (FireBrowse)PODN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127435
GTEX Portal (Tissue expression)PODN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5L7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5L7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5L7
Splice isoforms : SwissVarQ7Z5L7
PhosPhoSitePlusQ7Z5L7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_5    LRRNT   
Domain families : Pfam (Sanger)LRR_5 (PF13306)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13306    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)PODN
DMDM Disease mutations127435
Blocks (Seattle)PODN
SuperfamilyQ7Z5L7
Human Protein AtlasENSG00000174348
Peptide AtlasQ7Z5L7
HPRD10557
IPIIPI00419440   IPI00645660   IPI00941131   IPI00908607   IPI00910497   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5L7
IntAct (EBI)Q7Z5L7
FunCoupENSG00000174348
BioGRIDPODN
STRING (EMBL)PODN
ZODIACPODN
Ontologies - Pathways
QuickGOQ7Z5L7
Ontology : AmiGOprotein kinase inhibitor activity  collagen binding  proteinaceous extracellular matrix  extracellular space  cytoplasm  negative regulation of protein kinase activity  negative regulation of cell proliferation  cytokine-mediated signaling pathway  negative regulation of cell migration  negative regulation of JAK-STAT cascade  
Ontology : EGO-EBIprotein kinase inhibitor activity  collagen binding  proteinaceous extracellular matrix  extracellular space  cytoplasm  negative regulation of protein kinase activity  negative regulation of cell proliferation  cytokine-mediated signaling pathway  negative regulation of cell migration  negative regulation of JAK-STAT cascade  
NDEx NetworkPODN
Atlas of Cancer Signalling NetworkPODN
Wikipedia pathwaysPODN
Orthology - Evolution
OrthoDB127435
GeneTree (enSembl)ENSG00000174348
Phylogenetic Trees/Animal Genes : TreeFamPODN
HOVERGENQ7Z5L7
HOGENOMQ7Z5L7
Homologs : HomoloGenePODN
Homology/Alignments : Family Browser (UCSC)PODN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPODN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PODN
dbVarPODN
ClinVarPODN
1000_GenomesPODN 
Exome Variant ServerPODN
ExAC (Exome Aggregation Consortium)PODN (select the gene name)
Genetic variants : HAPMAP127435
Genomic Variants (DGV)PODN [DGVbeta]
DECIPHER (Syndromes)1:53527724-53551174  ENSG00000174348
CONAN: Copy Number AnalysisPODN 
Mutations
ICGC Data PortalPODN 
TCGA Data PortalPODN 
Broad Tumor PortalPODN
OASIS PortalPODN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPODN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPODN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PODN
DgiDB (Drug Gene Interaction Database)PODN
DoCM (Curated mutations)PODN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PODN (select a term)
intoGenPODN
Cancer3DPODN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608661   
Orphanet
MedgenPODN
Genetic Testing Registry PODN
NextProtQ7Z5L7 [Medical]
TSGene127435
GENETestsPODN
Huge Navigator PODN [HugePedia]
snp3D : Map Gene to Disease127435
BioCentury BCIQPODN
ClinGenPODN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127435
Chemical/Pharm GKB GenePA134980106
Clinical trialPODN
Miscellaneous
canSAR (ICR)PODN (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePODN
EVEXPODN
GoPubMedPODN
iHOPPODN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:22:05 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.