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PODNL1 (podocan-like 1)

Identity

Alias_symbol (synonym)FLJ23447
SLRR5B
Other alias
HGNC (Hugo) PODNL1
LocusID (NCBI) 79883
Atlas_Id 72040
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14042000 and ends at 14064204 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PODNL1   26275
Cards
Entrez_Gene (NCBI)PODNL1  79883  podocan-like 1
AliasesSLRR5B
GeneCards (Weizmann)PODNL1
Ensembl hg19 (Hinxton)ENSG00000132000 [Gene_View]  chr19:14042000-14064204 [Contig_View]  PODNL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132000 [Gene_View]  chr19:14042000-14064204 [Contig_View]  PODNL1 [Vega]
ICGC DataPortalENSG00000132000
TCGA cBioPortalPODNL1
AceView (NCBI)PODNL1
Genatlas (Paris)PODNL1
WikiGenes79883
SOURCE (Princeton)PODNL1
Genetics Home Reference (NIH)PODNL1
Genomic and cartography
GoldenPath hg19 (UCSC)PODNL1  -     chr19:14042000-14064204 -  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PODNL1  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblPODNL1 - 19p13.12 [CytoView hg19]  PODNL1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIPODNL1 [Mapview hg19]  PODNL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI219486 AK027100 AK290731 AK296101 AK298489
RefSeq transcript (Entrez)NM_001146254 NM_001146255 NM_024825
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)PODNL1
Cluster EST : UnigeneHs.448497 [ NCBI ]
CGAP (NCI)Hs.448497
Alternative Splicing GalleryENSG00000132000
Gene ExpressionPODNL1 [ NCBI-GEO ]   PODNL1 [ EBI - ARRAY_EXPRESS ]   PODNL1 [ SEEK ]   PODNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PODNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79883
GTEX Portal (Tissue expression)PODNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEZ8
Splice isoforms : SwissVarQ6PEZ8
PhosPhoSitePlusQ6PEZ8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)PODNL1
DMDM Disease mutations79883
Blocks (Seattle)PODNL1
SuperfamilyQ6PEZ8
Human Protein AtlasENSG00000132000
Peptide AtlasQ6PEZ8
HPRD08027
IPIIPI00302227   IPI00412448   IPI00922019   IPI01023070   IPI00929155   IPI01015999   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEZ8
IntAct (EBI)Q6PEZ8
FunCoupENSG00000132000
BioGRIDPODNL1
STRING (EMBL)PODNL1
ZODIACPODNL1
Ontologies - Pathways
QuickGOQ6PEZ8
Ontology : AmiGOproteinaceous extracellular matrix  
Ontology : EGO-EBIproteinaceous extracellular matrix  
NDEx NetworkPODNL1
Atlas of Cancer Signalling NetworkPODNL1
Wikipedia pathwaysPODNL1
Orthology - Evolution
OrthoDB79883
GeneTree (enSembl)ENSG00000132000
Phylogenetic Trees/Animal Genes : TreeFamPODNL1
HOVERGENQ6PEZ8
HOGENOMQ6PEZ8
Homologs : HomoloGenePODNL1
Homology/Alignments : Family Browser (UCSC)PODNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPODNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PODNL1
dbVarPODNL1
ClinVarPODNL1
1000_GenomesPODNL1 
Exome Variant ServerPODNL1
ExAC (Exome Aggregation Consortium)PODNL1 (select the gene name)
Genetic variants : HAPMAP79883
Genomic Variants (DGV)PODNL1 [DGVbeta]
DECIPHER (Syndromes)19:14042000-14064204  ENSG00000132000
CONAN: Copy Number AnalysisPODNL1 
Mutations
ICGC Data PortalPODNL1 
TCGA Data PortalPODNL1 
Broad Tumor PortalPODNL1
OASIS PortalPODNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPODNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPODNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PODNL1
DgiDB (Drug Gene Interaction Database)PODNL1
DoCM (Curated mutations)PODNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PODNL1 (select a term)
intoGenPODNL1
Cancer3DPODNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPODNL1
Genetic Testing Registry PODNL1
NextProtQ6PEZ8 [Medical]
TSGene79883
GENETestsPODNL1
Huge Navigator PODNL1 [HugePedia]
snp3D : Map Gene to Disease79883
BioCentury BCIQPODNL1
ClinGenPODNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79883
Chemical/Pharm GKB GenePA162399855
Clinical trialPODNL1
Miscellaneous
canSAR (ICR)PODNL1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePODNL1
EVEXPODNL1
GoPubMedPODNL1
iHOPPODNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:06 CET 2017

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