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PODXL2 (podocalyxin like 2)

Identity

Alias (NCBI)EG
PODLX2
HGNC (Hugo) PODXL2
HGNC Alias symbPODLX2
endoglycan
HGNC Alias nameendoglycan
HGNC Previous namepodocalyxin-like 2
LocusID (NCBI) 50512
Atlas_Id 72041
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 127629185 and ends at 127672802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PODXL2 (3q21.3) / LOC100507412 (-)PODXL2 (3q21.3) / PCM1 (8p22)TXNRD3 (3q21.3) / PODXL2 (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PODXL2   17936
Cards
Entrez_Gene (NCBI)PODXL2    podocalyxin like 2
AliasesEG; PODLX2
GeneCards (Weizmann)PODXL2
Ensembl hg19 (Hinxton)ENSG00000114631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114631 [Gene_View]  ENSG00000114631 [Sequence]  chr3:127629185-127672802 [Contig_View]  PODXL2 [Vega]
ICGC DataPortalENSG00000114631
TCGA cBioPortalPODXL2
AceView (NCBI)PODXL2
Genatlas (Paris)PODXL2
SOURCE (Princeton)PODXL2
Genetics Home Reference (NIH)PODXL2
Genomic and cartography
GoldenPath hg38 (UCSC)PODXL2  -     chr3:127629185-127672802 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PODXL2  -     3q21.3   [Description]    (hg19-Feb_2009)
GoldenPathPODXL2 - 3q21.3 [CytoView hg19]  PODXL2 - 3q21.3 [CytoView hg38]
ImmunoBaseENSG00000114631
Genome Data Viewer NCBIPODXL2 [Mapview hg19]  
OMIM616627   
Gene and transcription
Genbank (Entrez)AF219137 AL524055 AY359096 BC019330 BC052585
RefSeq transcript (Entrez)NM_015720
Consensus coding sequences : CCDS (NCBI)PODXL2
Gene ExpressionPODXL2 [ NCBI-GEO ]   PODXL2 [ EBI - ARRAY_EXPRESS ]   PODXL2 [ SEEK ]   PODXL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PODXL2 [ Firebrowse - Broad ]
GenevisibleExpression of PODXL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50512
GTEX Portal (Tissue expression)PODXL2
Human Protein AtlasENSG00000114631-PODXL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ53
PhosPhoSitePlusQ9NZ53
Domains : Interpro (EBI)CD34/Podocalyxin    PODXL2   
Domain families : Pfam (Sanger)CD34_antigen (PF06365)   
Domain families : Pfam (NCBI)pfam06365   
Conserved Domain (NCBI)PODXL2
SuperfamilyQ9NZ53
AlphaFold pdb e-kbQ9NZ53   
Human Protein Atlas [tissue]ENSG00000114631-PODXL2 [tissue]
HPRD15154
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ53
IntAct (EBI)Q9NZ53
BioGRIDPODXL2
STRING (EMBL)PODXL2
ZODIACPODXL2
Ontologies - Pathways
QuickGOQ9NZ53
Ontology : AmiGOprotein binding  glycosaminoglycan binding  Golgi lumen  integral component of plasma membrane  leukocyte tethering or rolling  leukocyte tethering or rolling  
Ontology : EGO-EBIprotein binding  glycosaminoglycan binding  Golgi lumen  integral component of plasma membrane  leukocyte tethering or rolling  leukocyte tethering or rolling  
NDEx NetworkPODXL2
Atlas of Cancer Signalling NetworkPODXL2
Wikipedia pathwaysPODXL2
Orthology - Evolution
OrthoDB50512
GeneTree (enSembl)ENSG00000114631
Phylogenetic Trees/Animal Genes : TreeFamPODXL2
Homologs : HomoloGenePODXL2
Homology/Alignments : Family Browser (UCSC)PODXL2
Gene fusions - Rearrangements
Fusion : QuiverPODXL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPODXL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PODXL2
dbVarPODXL2
ClinVarPODXL2
MonarchPODXL2
1000_GenomesPODXL2 
Exome Variant ServerPODXL2
GNOMAD BrowserENSG00000114631
Varsome BrowserPODXL2
ACMGPODXL2 variants
VarityQ9NZ53
Genomic Variants (DGV)PODXL2 [DGVbeta]
DECIPHERPODXL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPODXL2 
Mutations
ICGC Data PortalPODXL2 
TCGA Data PortalPODXL2 
Broad Tumor PortalPODXL2
OASIS PortalPODXL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPODXL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPODXL2
Mutations and Diseases : HGMDPODXL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPODXL2
DgiDB (Drug Gene Interaction Database)PODXL2
DoCM (Curated mutations)PODXL2
CIViC (Clinical Interpretations of Variants in Cancer)PODXL2
Cancer3DPODXL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616627   
Orphanet
DisGeNETPODXL2
MedgenPODXL2
Genetic Testing Registry PODXL2
NextProtQ9NZ53 [Medical]
GENETestsPODXL2
Target ValidationPODXL2
Huge Navigator PODXL2 [HugePedia]
ClinGenPODXL2
Clinical trials, drugs, therapy
MyCancerGenomePODXL2
Protein Interactions : CTDPODXL2
Pharm GKB GenePA134860950
PharosQ9NZ53
Clinical trialPODXL2
Miscellaneous
canSAR (ICR)PODXL2
HarmonizomePODXL2
DataMed IndexPODXL2
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPODXL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:16:40 CEST 2021

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