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PODXL2 (podocalyxin-like 2)

Identity

Alias_namespodocalyxin-like 2
Alias_symbol (synonym)PODLX2
endoglycan
Other aliasEG
HGNC (Hugo) PODXL2
LocusID (NCBI) 50512
Atlas_Id 72041
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 127348002 and ends at 127391653 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PODXL2 (3q21.3) / LOC100507412 (-)PODXL2 (3q21.3) / PCM1 (8p22)TXNRD3 (3q21.3) / PODXL2 (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PODXL2   17936
Cards
Entrez_Gene (NCBI)PODXL2  50512  podocalyxin-like 2
AliasesEG; PODLX2
GeneCards (Weizmann)PODXL2
Ensembl hg19 (Hinxton)ENSG00000114631 [Gene_View]  chr3:127348002-127391653 [Contig_View]  PODXL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114631 [Gene_View]  chr3:127348002-127391653 [Contig_View]  PODXL2 [Vega]
ICGC DataPortalENSG00000114631
TCGA cBioPortalPODXL2
AceView (NCBI)PODXL2
Genatlas (Paris)PODXL2
WikiGenes50512
SOURCE (Princeton)PODXL2
Genetics Home Reference (NIH)PODXL2
Genomic and cartography
GoldenPath hg19 (UCSC)PODXL2  -     chr3:127348002-127391653 +  3q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PODXL2  -     3q21.3   [Description]    (hg38-Dec_2013)
EnsemblPODXL2 - 3q21.3 [CytoView hg19]  PODXL2 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIPODXL2 [Mapview hg19]  PODXL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF219137 AL524055 AY359096 BC019330 BC052585
RefSeq transcript (Entrez)NM_015720
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)PODXL2
Cluster EST : UnigeneHs.591290 [ NCBI ]
CGAP (NCI)Hs.591290
Alternative Splicing GalleryENSG00000114631
Gene ExpressionPODXL2 [ NCBI-GEO ]   PODXL2 [ EBI - ARRAY_EXPRESS ]   PODXL2 [ SEEK ]   PODXL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PODXL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50512
GTEX Portal (Tissue expression)PODXL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ53
Splice isoforms : SwissVarQ9NZ53
PhosPhoSitePlusQ9NZ53
Domains : Interpro (EBI)CD34/Podocalyxin   
Domain families : Pfam (Sanger)CD34_antigen (PF06365)   
Domain families : Pfam (NCBI)pfam06365   
Conserved Domain (NCBI)PODXL2
DMDM Disease mutations50512
Blocks (Seattle)PODXL2
SuperfamilyQ9NZ53
Human Protein AtlasENSG00000114631
Peptide AtlasQ9NZ53
HPRD15154
IPIIPI00419595   IPI00978826   IPI00291300   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ53
IntAct (EBI)Q9NZ53
FunCoupENSG00000114631
BioGRIDPODXL2
STRING (EMBL)PODXL2
ZODIACPODXL2
Ontologies - Pathways
QuickGOQ9NZ53
Ontology : AmiGOprotein binding  glycosaminoglycan binding  integral component of plasma membrane  leukocyte tethering or rolling  
Ontology : EGO-EBIprotein binding  glycosaminoglycan binding  integral component of plasma membrane  leukocyte tethering or rolling  
NDEx NetworkPODXL2
Atlas of Cancer Signalling NetworkPODXL2
Wikipedia pathwaysPODXL2
Orthology - Evolution
OrthoDB50512
GeneTree (enSembl)ENSG00000114631
Phylogenetic Trees/Animal Genes : TreeFamPODXL2
HOVERGENQ9NZ53
HOGENOMQ9NZ53
Homologs : HomoloGenePODXL2
Homology/Alignments : Family Browser (UCSC)PODXL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPODXL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PODXL2
dbVarPODXL2
ClinVarPODXL2
1000_GenomesPODXL2 
Exome Variant ServerPODXL2
ExAC (Exome Aggregation Consortium)PODXL2 (select the gene name)
Genetic variants : HAPMAP50512
Genomic Variants (DGV)PODXL2 [DGVbeta]
DECIPHER (Syndromes)3:127348002-127391653  ENSG00000114631
CONAN: Copy Number AnalysisPODXL2 
Mutations
ICGC Data PortalPODXL2 
TCGA Data PortalPODXL2 
Broad Tumor PortalPODXL2
OASIS PortalPODXL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPODXL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPODXL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PODXL2
DgiDB (Drug Gene Interaction Database)PODXL2
DoCM (Curated mutations)PODXL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PODXL2 (select a term)
intoGenPODXL2
Cancer3DPODXL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPODXL2
Genetic Testing Registry PODXL2
NextProtQ9NZ53 [Medical]
TSGene50512
GENETestsPODXL2
Huge Navigator PODXL2 [HugePedia]
snp3D : Map Gene to Disease50512
BioCentury BCIQPODXL2
ClinGenPODXL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50512
Chemical/Pharm GKB GenePA134860950
Clinical trialPODXL2
Miscellaneous
canSAR (ICR)PODXL2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePODXL2
EVEXPODXL2
GoPubMedPODXL2
iHOPPODXL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:39:06 CET 2017

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