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POF1B (premature ovarian failure, 1B)

Identity

Alias_symbol (synonym)POF
FLJ22792
Other aliasPOF2B
HGNC (Hugo) POF1B
LocusID (NCBI) 79983
Atlas_Id 72042
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 84537123 and ends at 84634748 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POF1B   13711
Cards
Entrez_Gene (NCBI)POF1B  79983  premature ovarian failure, 1B
AliasesPOF; POF2B
GeneCards (Weizmann)POF1B
Ensembl hg19 (Hinxton)ENSG00000124429 [Gene_View]  chrX:84537123-84634748 [Contig_View]  POF1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000124429 [Gene_View]  chrX:84537123-84634748 [Contig_View]  POF1B [Vega]
ICGC DataPortalENSG00000124429
TCGA cBioPortalPOF1B
AceView (NCBI)POF1B
Genatlas (Paris)POF1B
WikiGenes79983
SOURCE (Princeton)POF1B
Genetics Home Reference (NIH)POF1B
Genomic and cartography
GoldenPath hg19 (UCSC)POF1B  -     chrX:84537123-84634748 -  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POF1B  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblPOF1B - Xq21.1 [CytoView hg19]  POF1B - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIPOF1B [Mapview hg19]  POF1B [Mapview hg38]
OMIM300603   300604   
Gene and transcription
Genbank (Entrez)AF309774 AI591162 AK025039 AK025080 AK026445
RefSeq transcript (Entrez)NM_001307940 NM_024921
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016358 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)POF1B
Cluster EST : UnigeneHs.267038 [ NCBI ]
CGAP (NCI)Hs.267038
Alternative Splicing GalleryENSG00000124429
Gene ExpressionPOF1B [ NCBI-GEO ]   POF1B [ EBI - ARRAY_EXPRESS ]   POF1B [ SEEK ]   POF1B [ MEM ]
Gene Expression Viewer (FireBrowse)POF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79983
GTEX Portal (Tissue expression)POF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVV4
Splice isoforms : SwissVarQ8WVV4
PhosPhoSitePlusQ8WVV4
Domains : Interpro (EBI)POF1B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POF1B
DMDM Disease mutations79983
Blocks (Seattle)POF1B
PDB (SRS)3BH9   
PDB (PDBSum)3BH9   
PDB (IMB)3BH9   
PDB (RSDB)3BH9   
Structural Biology KnowledgeBase3BH9   
SCOP (Structural Classification of Proteins)3BH9   
CATH (Classification of proteins structures)3BH9   
SuperfamilyQ8WVV4
Human Protein AtlasENSG00000124429
Peptide AtlasQ8WVV4
HPRD06679
IPIIPI00103242   IPI00646687   IPI00794787   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVV4
IntAct (EBI)Q8WVV4
FunCoupENSG00000124429
BioGRIDPOF1B
STRING (EMBL)POF1B
ZODIACPOF1B
Ontologies - Pathways
QuickGOQ8WVV4
Ontology : AmiGOactin binding  bicellular tight junction  
Ontology : EGO-EBIactin binding  bicellular tight junction  
NDEx NetworkPOF1B
Atlas of Cancer Signalling NetworkPOF1B
Wikipedia pathwaysPOF1B
Orthology - Evolution
OrthoDB79983
GeneTree (enSembl)ENSG00000124429
Phylogenetic Trees/Animal Genes : TreeFamPOF1B
HOVERGENQ8WVV4
HOGENOMQ8WVV4
Homologs : HomoloGenePOF1B
Homology/Alignments : Family Browser (UCSC)POF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POF1B
dbVarPOF1B
ClinVarPOF1B
1000_GenomesPOF1B 
Exome Variant ServerPOF1B
ExAC (Exome Aggregation Consortium)POF1B (select the gene name)
Genetic variants : HAPMAP79983
Genomic Variants (DGV)POF1B [DGVbeta]
DECIPHER (Syndromes)X:84537123-84634748  ENSG00000124429
CONAN: Copy Number AnalysisPOF1B 
Mutations
ICGC Data PortalPOF1B 
TCGA Data PortalPOF1B 
Broad Tumor PortalPOF1B
OASIS PortalPOF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch POF1B
DgiDB (Drug Gene Interaction Database)POF1B
DoCM (Curated mutations)POF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POF1B (select a term)
intoGenPOF1B
Cancer3DPOF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300603    300604   
Orphanet
MedgenPOF1B
Genetic Testing Registry POF1B
NextProtQ8WVV4 [Medical]
TSGene79983
GENETestsPOF1B
Huge Navigator POF1B [HugePedia]
snp3D : Map Gene to Disease79983
BioCentury BCIQPOF1B
ClinGenPOF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79983
Chemical/Pharm GKB GenePA134937695
Clinical trialPOF1B
Miscellaneous
canSAR (ICR)POF1B (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOF1B
EVEXPOF1B
GoPubMedPOF1B
iHOPPOF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:06 CET 2017

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