Atlas of Genetics and Cytogenetics in Oncology and Haematology


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POGK (pogo transposable element with KRAB domain)

Identity

Alias_symbol (synonym)KIAA15131
LST003
BASS2
KRBOX2
Other alias
HGNC (Hugo) POGK
LocusID (NCBI) 57645
Atlas_Id 72044
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 166808724 and ends at 166823709 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
POGK (1q24.1) / FMOD (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POGK   18800
Cards
Entrez_Gene (NCBI)POGK  57645  pogo transposable element with KRAB domain
AliasesBASS2; KRBOX2; LST003
GeneCards (Weizmann)POGK
Ensembl hg19 (Hinxton) [Gene_View]  chr1:166808724-166823709 [Contig_View]  POGK [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:166808724-166823709 [Contig_View]  POGK [Vega]
TCGA cBioPortalPOGK
AceView (NCBI)POGK
Genatlas (Paris)POGK
WikiGenes57645
SOURCE (Princeton)POGK
Genetics Home Reference (NIH)POGK
Genomic and cartography
GoldenPath hg19 (UCSC)POGK  -     chr1:166808724-166823709 +  1q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POGK  -     1q24.1   [Description]    (hg38-Dec_2013)
EnsemblPOGK - 1q24.1 [CytoView hg19]  POGK - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBIPOGK [Mapview hg19]  POGK [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040946 AF111706 AF131746 AF139898 AK027079
RefSeq transcript (Entrez)NM_017542
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)POGK
Cluster EST : UnigeneHs.432752 [ NCBI ]
CGAP (NCI)Hs.432752
Gene ExpressionPOGK [ NCBI-GEO ]   POGK [ EBI - ARRAY_EXPRESS ]   POGK [ SEEK ]   POGK [ MEM ]
Gene Expression Viewer (FireBrowse)POGK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57645
GTEX Portal (Tissue expression)POGK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P215   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P215  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P215
Splice isoforms : SwissVarQ9P215
PhosPhoSitePlusQ9P215
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    KRAB (PS50805)   
Domains : Interpro (EBI)Brinker_DNA-bd    DDE_SF_endonuclease_CENPB-like    Homeodomain-like    HTH_CenpB_DNA-bd_dom    Krueppel-associated_box   
Domain families : Pfam (Sanger)BrkDBD (PF09607)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)    KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam09607    pfam03184    pfam03221    pfam01352   
Domain families : Smart (EMBL)CENPB (SM00674)  KRAB (SM00349)  
Conserved Domain (NCBI)POGK
DMDM Disease mutations57645
Blocks (Seattle)POGK
SuperfamilyQ9P215
Peptide AtlasQ9P215
HPRD17872
IPIIPI00001651   IPI01010618   IPI01015402   IPI00383877   IPI00647934   
Protein Interaction databases
DIP (DOE-UCLA)Q9P215
IntAct (EBI)Q9P215
BioGRIDPOGK
STRING (EMBL)POGK
ZODIACPOGK
Ontologies - Pathways
QuickGOQ9P215
Ontology : AmiGODNA binding  protein binding  nucleus  regulation of transcription, DNA-templated  multicellular organismal development  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  regulation of transcription, DNA-templated  multicellular organismal development  
NDEx NetworkPOGK
Atlas of Cancer Signalling NetworkPOGK
Wikipedia pathwaysPOGK
Orthology - Evolution
OrthoDB57645
Phylogenetic Trees/Animal Genes : TreeFamPOGK
HOVERGENQ9P215
HOGENOMQ9P215
Homologs : HomoloGenePOGK
Homology/Alignments : Family Browser (UCSC)POGK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOGK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POGK
dbVarPOGK
ClinVarPOGK
1000_GenomesPOGK 
Exome Variant ServerPOGK
ExAC (Exome Aggregation Consortium)POGK (select the gene name)
Genetic variants : HAPMAP57645
Genomic Variants (DGV)POGK [DGVbeta]
DECIPHER (Syndromes)1:166808724-166823709  
CONAN: Copy Number AnalysisPOGK 
Mutations
ICGC Data PortalPOGK 
TCGA Data PortalPOGK 
Broad Tumor PortalPOGK
OASIS PortalPOGK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOGK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOGK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POGK
DgiDB (Drug Gene Interaction Database)POGK
DoCM (Curated mutations)POGK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POGK (select a term)
intoGenPOGK
Cancer3DPOGK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOGK
Genetic Testing Registry POGK
NextProtQ9P215 [Medical]
TSGene57645
GENETestsPOGK
Huge Navigator POGK [HugePedia]
snp3D : Map Gene to Disease57645
BioCentury BCIQPOGK
ClinGenPOGK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57645
Chemical/Pharm GKB GenePA38684
Clinical trialPOGK
Miscellaneous
canSAR (ICR)POGK (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOGK
EVEXPOGK
GoPubMedPOGK
iHOPPOGK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:06 CET 2017

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