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POGLUT3 (protein O-glucosyltransferase 3)

Identity

Alias (NCBI)KDELC2
HGNC (Hugo) POGLUT3
HGNC Alias symbMGC33424
HGNC Previous nameKDEL (Lys-Asp-Glu-Leu) containing 2
LocusID (NCBI) 143888
Atlas_Id 64832
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 108472116 and ends at 108498384 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)POGLUT3   28496
Cards
Entrez_Gene (NCBI)POGLUT3    protein O-glucosyltransferase 3
AliasesKDELC2
GeneCards (Weizmann)POGLUT3
Ensembl hg19 (Hinxton)ENSG00000178202 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178202 [Gene_View]  ENSG00000178202 [Sequence]  chr11:108472116-108498384 [Contig_View]  POGLUT3 [Vega]
ICGC DataPortalENSG00000178202
TCGA cBioPortalPOGLUT3
AceView (NCBI)POGLUT3
Genatlas (Paris)POGLUT3
SOURCE (Princeton)POGLUT3
Genetics Home Reference (NIH)POGLUT3
Genomic and cartography
GoldenPath hg38 (UCSC)POGLUT3  -     chr11:108472116-108498384 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POGLUT3  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathPOGLUT3 - 11q22.3 [CytoView hg19]  POGLUT3 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000178202
Genome Data Viewer NCBIPOGLUT3 [Mapview hg19]  
OMIM618503   
Gene and transcription
Genbank (Entrez)AF533708 AI628702 AK098206 AK123743 AK125519
RefSeq transcript (Entrez)NM_001363502 NM_001363503 NM_153705
Consensus coding sequences : CCDS (NCBI)POGLUT3
Gene ExpressionPOGLUT3 [ NCBI-GEO ]   POGLUT3 [ EBI - ARRAY_EXPRESS ]   POGLUT3 [ SEEK ]   POGLUT3 [ MEM ]
Gene Expression Viewer (FireBrowse)POGLUT3 [ Firebrowse - Broad ]
GenevisibleExpression of POGLUT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143888
GTEX Portal (Tissue expression)POGLUT3
Human Protein AtlasENSG00000178202-POGLUT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4H8
PhosPhoSitePlusQ7Z4H8
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)    FILAMIN_REPEAT (PS50194)   
Domains : Interpro (EBI)CAP10    Filamin/ABP280_repeat-like    Filamin/ABP280_rpt    Ig-like_fold    Ig_E-set   
Domain families : Pfam (Sanger)Filamin (PF00630)    Glyco_transf_90 (PF05686)   
Domain families : Pfam (NCBI)pfam00630    pfam05686   
Domain families : Smart (EMBL)CAP10 (SM00672)  IG_FLMN (SM00557)  
Conserved Domain (NCBI)POGLUT3
SuperfamilyQ7Z4H8
AlphaFold pdb e-kbQ7Z4H8   
Human Protein Atlas [tissue]ENSG00000178202-POGLUT3 [tissue]
HPRD13773
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4H8
IntAct (EBI)Q7Z4H8
BioGRIDPOGLUT3
STRING (EMBL)POGLUT3
ZODIACPOGLUT3
Ontologies - Pathways
QuickGOQ7Z4H8
Ontology : AmiGOcellular_component  endoplasmic reticulum lumen  endomembrane system  protein O-linked glycosylation via serine  UDP-glucosyltransferase activity  UDP-xylosyltransferase activity  glucosyltransferase activity  EGF-domain serine glucosyltransferase activity  EGF-domain serine xylosyltransferase activity  
Ontology : EGO-EBIcellular_component  endoplasmic reticulum lumen  endomembrane system  protein O-linked glycosylation via serine  UDP-glucosyltransferase activity  UDP-xylosyltransferase activity  glucosyltransferase activity  EGF-domain serine glucosyltransferase activity  EGF-domain serine xylosyltransferase activity  
NDEx NetworkPOGLUT3
Atlas of Cancer Signalling NetworkPOGLUT3
Wikipedia pathwaysPOGLUT3
Orthology - Evolution
OrthoDB143888
GeneTree (enSembl)ENSG00000178202
Phylogenetic Trees/Animal Genes : TreeFamPOGLUT3
Homologs : HomoloGenePOGLUT3
Homology/Alignments : Family Browser (UCSC)POGLUT3
Gene fusions - Rearrangements
Fusion : QuiverPOGLUT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOGLUT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POGLUT3
dbVarPOGLUT3
ClinVarPOGLUT3
MonarchPOGLUT3
1000_GenomesPOGLUT3 
Exome Variant ServerPOGLUT3
GNOMAD BrowserENSG00000178202
Varsome BrowserPOGLUT3
ACMGPOGLUT3 variants
VarityQ7Z4H8
Genomic Variants (DGV)POGLUT3 [DGVbeta]
DECIPHERPOGLUT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOGLUT3 
Mutations
ICGC Data PortalPOGLUT3 
TCGA Data PortalPOGLUT3 
Broad Tumor PortalPOGLUT3
OASIS PortalPOGLUT3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOGLUT3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPOGLUT3
DgiDB (Drug Gene Interaction Database)POGLUT3
DoCM (Curated mutations)POGLUT3
CIViC (Clinical Interpretations of Variants in Cancer)POGLUT3
Cancer3DPOGLUT3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618503   
Orphanet
DisGeNETPOGLUT3
MedgenPOGLUT3
Genetic Testing Registry POGLUT3
NextProtQ7Z4H8 [Medical]
GENETestsPOGLUT3
Target ValidationPOGLUT3
Huge Navigator POGLUT3 [HugePedia]
ClinGenPOGLUT3
Clinical trials, drugs, therapy
MyCancerGenomePOGLUT3
Protein Interactions : CTDPOGLUT3
Pharm GKB GenePA134904072
PharosQ7Z4H8
Clinical trialPOGLUT3
Miscellaneous
canSAR (ICR)POGLUT3
HarmonizomePOGLUT3
DataMed IndexPOGLUT3
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPOGLUT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:16:41 CEST 2021

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