Atlas of Genetics and Cytogenetics in Oncology and Haematology


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POGZ (pogo transposable element derived with ZNF domain)

Identity

Alias_symbol (synonym)KIAA0461
ZNF635m
ZNF280E
Other aliasMRD37
WHSUS
ZNF635
HGNC (Hugo) POGZ
LocusID (NCBI) 23126
Atlas_Id 72045
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151402724 and ends at 151459465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POGZ (1q21.3) / CHCHD3 (7q32.3)POGZ (1q21.3) / GBA (1q22)POGZ (1q21.3) / POGZ (1q21.3)
SLC25A4 (4q35.1) / POGZ (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POGZ   18801
Cards
Entrez_Gene (NCBI)POGZ  23126  pogo transposable element derived with ZNF domain
AliasesMRD37; WHSUS; ZNF280E; ZNF635; 
ZNF635m
GeneCards (Weizmann)POGZ
Ensembl hg19 (Hinxton)ENSG00000143442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143442 [Gene_View]  chr1:151402724-151459465 [Contig_View]  POGZ [Vega]
ICGC DataPortalENSG00000143442
TCGA cBioPortalPOGZ
AceView (NCBI)POGZ
Genatlas (Paris)POGZ
WikiGenes23126
SOURCE (Princeton)POGZ
Genetics Home Reference (NIH)POGZ
Genomic and cartography
GoldenPath hg38 (UCSC)POGZ  -     chr1:151402724-151459465 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POGZ  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblPOGZ - 1q21.3 [CytoView hg19]  POGZ - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIPOGZ [Mapview hg19]  POGZ [Mapview hg38]
OMIM614787   616364   
Gene and transcription
Genbank (Entrez)AB007930 AB037911 AB075477 AJ242979 AK000199
RefSeq transcript (Entrez)NM_001194937 NM_001194938 NM_015100 NM_145796 NM_207171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POGZ
Cluster EST : UnigeneHs.489873 [ NCBI ]
CGAP (NCI)Hs.489873
Alternative Splicing GalleryENSG00000143442
Gene ExpressionPOGZ [ NCBI-GEO ]   POGZ [ EBI - ARRAY_EXPRESS ]   POGZ [ SEEK ]   POGZ [ MEM ]
Gene Expression Viewer (FireBrowse)POGZ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23126
GTEX Portal (Tissue expression)POGZ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3K3
Splice isoforms : SwissVarQ7Z3K3
PhosPhoSitePlusQ7Z3K3
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)POGZ
DMDM Disease mutations23126
Blocks (Seattle)POGZ
PDB (SRS)2E72    2N3A   
PDB (PDBSum)2E72    2N3A   
PDB (IMB)2E72    2N3A   
PDB (RSDB)2E72    2N3A   
Structural Biology KnowledgeBase2E72    2N3A   
SCOP (Structural Classification of Proteins)2E72    2N3A   
CATH (Classification of proteins structures)2E72    2N3A   
SuperfamilyQ7Z3K3
Human Protein AtlasENSG00000143442
Peptide AtlasQ7Z3K3
HPRD11445
IPIIPI00410717   IPI00514439   IPI00410719   IPI00982239   IPI00514078   IPI01015636   IPI00853334   IPI00853131   IPI00410720   IPI00915770   IPI01011004   IPI00981992   IPI00981521   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3K3
IntAct (EBI)Q7Z3K3
FunCoupENSG00000143442
BioGRIDPOGZ
STRING (EMBL)POGZ
ZODIACPOGZ
Ontologies - Pathways
QuickGOQ7Z3K3
Ontology : AmiGOnuclear chromatin  DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  mitotic sister chromatid cohesion  metal ion binding  cell division  kinetochore assembly  
Ontology : EGO-EBInuclear chromatin  DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  mitotic sister chromatid cohesion  metal ion binding  cell division  kinetochore assembly  
NDEx NetworkPOGZ
Atlas of Cancer Signalling NetworkPOGZ
Wikipedia pathwaysPOGZ
Orthology - Evolution
OrthoDB23126
GeneTree (enSembl)ENSG00000143442
Phylogenetic Trees/Animal Genes : TreeFamPOGZ
HOVERGENQ7Z3K3
HOGENOMQ7Z3K3
Homologs : HomoloGenePOGZ
Homology/Alignments : Family Browser (UCSC)POGZ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOGZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POGZ
dbVarPOGZ
ClinVarPOGZ
1000_GenomesPOGZ 
Exome Variant ServerPOGZ
ExAC (Exome Aggregation Consortium)POGZ (select the gene name)
Genetic variants : HAPMAP23126
Genomic Variants (DGV)POGZ [DGVbeta]
DECIPHERPOGZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOGZ 
Mutations
ICGC Data PortalPOGZ 
TCGA Data PortalPOGZ 
Broad Tumor PortalPOGZ
OASIS PortalPOGZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOGZ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOGZ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POGZ
DgiDB (Drug Gene Interaction Database)POGZ
DoCM (Curated mutations)POGZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POGZ (select a term)
intoGenPOGZ
Cancer3DPOGZ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614787    616364   
Orphanet
MedgenPOGZ
Genetic Testing Registry POGZ
NextProtQ7Z3K3 [Medical]
TSGene23126
GENETestsPOGZ
Target ValidationPOGZ
Huge Navigator POGZ [HugePedia]
snp3D : Map Gene to Disease23126
BioCentury BCIQPOGZ
ClinGenPOGZ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23126
Chemical/Pharm GKB GenePA38685
Clinical trialPOGZ
Miscellaneous
canSAR (ICR)POGZ (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOGZ
EVEXPOGZ
GoPubMedPOGZ
iHOPPOGZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:36:49 CEST 2017

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