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POLDIP2 (DNA polymerase delta interacting protein 2)

Identity

Alias (NCBI)PDIP38
POLD4
p38
HGNC (Hugo) POLDIP2
HGNC Alias symbPDIP38
DKFZP586F1524
HGNC Previous namepolymerase (DNA-directed), delta interacting protein 2
LocusID (NCBI) 26073
Atlas_Id 41772
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28346633 and ends at 28357527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
POLDIP2 (17q11.2) / BRIP1 (17q23.2)RARA (17q21.2) / POLDIP2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)POLDIP2   23781
Cards
Entrez_Gene (NCBI)POLDIP2    DNA polymerase delta interacting protein 2
AliasesPDIP38; POLD4; p38
GeneCards (Weizmann)POLDIP2
Ensembl hg19 (Hinxton)ENSG00000004142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000004142 [Gene_View]  ENSG00000004142 [Sequence]  chr17:28346633-28357527 [Contig_View]  POLDIP2 [Vega]
ICGC DataPortalENSG00000004142
TCGA cBioPortalPOLDIP2
AceView (NCBI)POLDIP2
Genatlas (Paris)POLDIP2
SOURCE (Princeton)POLDIP2
Genetics Home Reference (NIH)POLDIP2
Genomic and cartography
GoldenPath hg38 (UCSC)POLDIP2  -     chr17:28346633-28357527 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POLDIP2  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPOLDIP2 - 17q11.2 [CytoView hg19]  POLDIP2 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000004142
Genome Data Viewer NCBIPOLDIP2 [Mapview hg19]  
OMIM611519   
Gene and transcription
Genbank (Entrez)AF077203 AF179891 AI917975 AK293707 AK313232
RefSeq transcript (Entrez)NM_001290145 NM_015584
Consensus coding sequences : CCDS (NCBI)POLDIP2
Gene ExpressionPOLDIP2 [ NCBI-GEO ]   POLDIP2 [ EBI - ARRAY_EXPRESS ]   POLDIP2 [ SEEK ]   POLDIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)POLDIP2 [ Firebrowse - Broad ]
GenevisibleExpression of POLDIP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26073
GTEX Portal (Tissue expression)POLDIP2
Human Protein AtlasENSG00000004142-POLDIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2S7
PhosPhoSitePlusQ9Y2S7
Domaine pattern : Prosite (Expaxy)APAG (PS51087)   
Domains : Interpro (EBI)ApaG_domain    ApaG_sf    Hemimethylated_DNA-bd_dom    Hemimethylated_DNA-bd_sf   
Domain families : Pfam (Sanger)DUF525 (PF04379)    YccV-like (PF08755)   
Domain families : Pfam (NCBI)pfam04379    pfam08755   
Domain families : Smart (EMBL)YccV-like (SM00992)  
Conserved Domain (NCBI)POLDIP2
PDB (RSDB)6Z9C   
PDB Europe6Z9C   
PDB (PDBSum)6Z9C   
PDB (IMB)6Z9C   
Structural Biology KnowledgeBase6Z9C   
SCOP (Structural Classification of Proteins)6Z9C   
CATH (Classification of proteins structures)6Z9C   
SuperfamilyQ9Y2S7
AlphaFold pdb e-kbQ9Y2S7   
Human Protein Atlas [tissue]ENSG00000004142-POLDIP2 [tissue]
HPRD17874
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2S7
IntAct (EBI)Q9Y2S7
BioGRIDPOLDIP2
STRING (EMBL)POLDIP2
ZODIACPOLDIP2
Ontologies - Pathways
QuickGOQ9Y2S7
Ontology : AmiGODNA binding  protein binding  nucleus  nucleus  mitochondrion  mitochondrial matrix  negative regulation of macroautophagy  mitochondrial nucleoid  mitochondrial nucleoid  positive regulation of mitotic cell cycle  mitochondrion morphogenesis  error-free translesion synthesis  error-free translesion synthesis  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleus  mitochondrion  mitochondrial matrix  negative regulation of macroautophagy  mitochondrial nucleoid  mitochondrial nucleoid  positive regulation of mitotic cell cycle  mitochondrion morphogenesis  error-free translesion synthesis  error-free translesion synthesis  
NDEx NetworkPOLDIP2
Atlas of Cancer Signalling NetworkPOLDIP2
Wikipedia pathwaysPOLDIP2
Orthology - Evolution
OrthoDB26073
GeneTree (enSembl)ENSG00000004142
Phylogenetic Trees/Animal Genes : TreeFamPOLDIP2
Homologs : HomoloGenePOLDIP2
Homology/Alignments : Family Browser (UCSC)POLDIP2
Gene fusions - Rearrangements
Fusion : MitelmanPOLDIP2/BRIP1 [17q11.2/17q23.2]  
Fusion : MitelmanRARA/POLDIP2 [17q21.2/17q11.2]  
Fusion : QuiverPOLDIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLDIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLDIP2
dbVarPOLDIP2
ClinVarPOLDIP2
MonarchPOLDIP2
1000_GenomesPOLDIP2 
Exome Variant ServerPOLDIP2
GNOMAD BrowserENSG00000004142
Varsome BrowserPOLDIP2
ACMGPOLDIP2 variants
VarityQ9Y2S7
Genomic Variants (DGV)POLDIP2 [DGVbeta]
DECIPHERPOLDIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOLDIP2 
Mutations
ICGC Data PortalPOLDIP2 
TCGA Data PortalPOLDIP2 
Broad Tumor PortalPOLDIP2
OASIS PortalPOLDIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLDIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPOLDIP2
Mutations and Diseases : HGMDPOLDIP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPOLDIP2
DgiDB (Drug Gene Interaction Database)POLDIP2
DoCM (Curated mutations)POLDIP2
CIViC (Clinical Interpretations of Variants in Cancer)POLDIP2
Cancer3DPOLDIP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611519   
Orphanet
DisGeNETPOLDIP2
MedgenPOLDIP2
Genetic Testing Registry POLDIP2
NextProtQ9Y2S7 [Medical]
GENETestsPOLDIP2
Target ValidationPOLDIP2
Huge Navigator POLDIP2 [HugePedia]
ClinGenPOLDIP2
Clinical trials, drugs, therapy
MyCancerGenomePOLDIP2
Protein Interactions : CTDPOLDIP2
Pharm GKB GenePA134866227
PharosQ9Y2S7
Clinical trialPOLDIP2
Miscellaneous
canSAR (ICR)POLDIP2
HarmonizomePOLDIP2
DataMed IndexPOLDIP2
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPOLDIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:26:02 CEST 2021

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