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POLDIP2 (DNA polymerase delta interacting protein 2)

Identity

Alias_namespolymerase (DNA-directed)
Alias_symbol (synonym)PDIP38
DKFZP586F1524
Other aliasPOLD4
p38
HGNC (Hugo) POLDIP2
LocusID (NCBI) 26073
Atlas_Id 41772
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28346628 and ends at 28357589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLDIP2 (17q11.2) / BRIP1 (17q23.2)RARA (17q21.2) / POLDIP2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLDIP2   23781
Cards
Entrez_Gene (NCBI)POLDIP2  26073  DNA polymerase delta interacting protein 2
AliasesPDIP38; POLD4; p38
GeneCards (Weizmann)POLDIP2
Ensembl hg19 (Hinxton)ENSG00000004142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000004142 [Gene_View]  chr17:28346628-28357589 [Contig_View]  POLDIP2 [Vega]
ICGC DataPortalENSG00000004142
TCGA cBioPortalPOLDIP2
AceView (NCBI)POLDIP2
Genatlas (Paris)POLDIP2
WikiGenes26073
SOURCE (Princeton)POLDIP2
Genetics Home Reference (NIH)POLDIP2
Genomic and cartography
GoldenPath hg38 (UCSC)POLDIP2  -     chr17:28346628-28357589 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POLDIP2  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblPOLDIP2 - 17q11.2 [CytoView hg19]  POLDIP2 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIPOLDIP2 [Mapview hg19]  POLDIP2 [Mapview hg38]
OMIM611519   
Gene and transcription
Genbank (Entrez)AF077203 AF179891 AI917975 AK293707 AK313232
RefSeq transcript (Entrez)NM_001290145 NM_015584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POLDIP2
Cluster EST : UnigeneHs.241543 [ NCBI ]
CGAP (NCI)Hs.241543
Alternative Splicing GalleryENSG00000004142
Gene ExpressionPOLDIP2 [ NCBI-GEO ]   POLDIP2 [ EBI - ARRAY_EXPRESS ]   POLDIP2 [ SEEK ]   POLDIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)POLDIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26073
GTEX Portal (Tissue expression)POLDIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2S7
Splice isoforms : SwissVarQ9Y2S7
PhosPhoSitePlusQ9Y2S7
Domaine pattern : Prosite (Expaxy)APAG (PS51087)   
Domains : Interpro (EBI)ApaG_domain    Hemimethylated_DNA-bd_dom   
Domain families : Pfam (Sanger)DUF525 (PF04379)    YccV-like (PF08755)   
Domain families : Pfam (NCBI)pfam04379    pfam08755   
Domain families : Smart (EMBL)YccV-like (SM00992)  
Conserved Domain (NCBI)POLDIP2
DMDM Disease mutations26073
Blocks (Seattle)POLDIP2
SuperfamilyQ9Y2S7
Human Protein AtlasENSG00000004142
Peptide AtlasQ9Y2S7
HPRD17874
IPIIPI00165506   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2S7
IntAct (EBI)Q9Y2S7
FunCoupENSG00000004142
BioGRIDPOLDIP2
STRING (EMBL)POLDIP2
ZODIACPOLDIP2
Ontologies - Pathways
QuickGOQ9Y2S7
Ontology : AmiGODNA binding  protein binding  nucleus  mitochondrion  negative regulation of macroautophagy  mitochondrial nucleoid  positive regulation of mitotic cell cycle  mitochondrion morphogenesis  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  mitochondrion  negative regulation of macroautophagy  mitochondrial nucleoid  positive regulation of mitotic cell cycle  mitochondrion morphogenesis  
NDEx NetworkPOLDIP2
Atlas of Cancer Signalling NetworkPOLDIP2
Wikipedia pathwaysPOLDIP2
Orthology - Evolution
OrthoDB26073
GeneTree (enSembl)ENSG00000004142
Phylogenetic Trees/Animal Genes : TreeFamPOLDIP2
HOVERGENQ9Y2S7
HOGENOMQ9Y2S7
Homologs : HomoloGenePOLDIP2
Homology/Alignments : Family Browser (UCSC)POLDIP2
Gene fusions - Rearrangements
Fusion : MitelmanPOLDIP2/BRIP1 [17q11.2/17q23.2]  
Fusion : MitelmanRARA/POLDIP2 [17q21.2/17q11.2]  [t(17;17)(q11;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLDIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLDIP2
dbVarPOLDIP2
ClinVarPOLDIP2
1000_GenomesPOLDIP2 
Exome Variant ServerPOLDIP2
ExAC (Exome Aggregation Consortium)POLDIP2 (select the gene name)
Genetic variants : HAPMAP26073
Genomic Variants (DGV)POLDIP2 [DGVbeta]
DECIPHERPOLDIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOLDIP2 
Mutations
ICGC Data PortalPOLDIP2 
TCGA Data PortalPOLDIP2 
Broad Tumor PortalPOLDIP2
OASIS PortalPOLDIP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOLDIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch POLDIP2
DgiDB (Drug Gene Interaction Database)POLDIP2
DoCM (Curated mutations)POLDIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLDIP2 (select a term)
intoGenPOLDIP2
Cancer3DPOLDIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611519   
Orphanet
MedgenPOLDIP2
Genetic Testing Registry POLDIP2
NextProtQ9Y2S7 [Medical]
TSGene26073
GENETestsPOLDIP2
Target ValidationPOLDIP2
Huge Navigator POLDIP2 [HugePedia]
snp3D : Map Gene to Disease26073
BioCentury BCIQPOLDIP2
ClinGenPOLDIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26073
Chemical/Pharm GKB GenePA134866227
Clinical trialPOLDIP2
Miscellaneous
canSAR (ICR)POLDIP2 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLDIP2
EVEXPOLDIP2
GoPubMedPOLDIP2
iHOPPOLDIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:50:13 CEST 2017

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