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POLI (polymerase (DNA) iota)

Identity

Alias_namesRAD3OB
RAD30B
polymerase (DNA directed) iota
polymerase (DNA) iota
Other alias
HGNC (Hugo) POLI
LocusID (NCBI) 11201
Atlas_Id 41776
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 51795849 and ends at 51824604 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHD2 (15q26.1) / POLI (18q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLI   9182
Cards
Entrez_Gene (NCBI)POLI  11201  polymerase (DNA) iota
AliasesRAD30B; RAD3OB
GeneCards (Weizmann)POLI
Ensembl hg19 (Hinxton)ENSG00000101751 [Gene_View]  chr18:51795849-51824604 [Contig_View]  POLI [Vega]
Ensembl hg38 (Hinxton)ENSG00000101751 [Gene_View]  chr18:51795849-51824604 [Contig_View]  POLI [Vega]
ICGC DataPortalENSG00000101751
TCGA cBioPortalPOLI
AceView (NCBI)POLI
Genatlas (Paris)POLI
WikiGenes11201
SOURCE (Princeton)POLI
Genetics Home Reference (NIH)POLI
Genomic and cartography
GoldenPath hg19 (UCSC)POLI  -     chr18:51795849-51824604 +  18q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POLI  -     18q21.2   [Description]    (hg38-Dec_2013)
EnsemblPOLI - 18q21.2 [CytoView hg19]  POLI - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBIPOLI [Mapview hg19]  POLI [Mapview hg38]
OMIM605252   
Gene and transcription
Genbank (Entrez)AF140501 AF245438 AK093688 AK226057 AK301578
RefSeq transcript (Entrez)NM_007195
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)POLI
Cluster EST : UnigeneHs.438533 [ NCBI ]
CGAP (NCI)Hs.438533
Alternative Splicing GalleryENSG00000101751
Gene ExpressionPOLI [ NCBI-GEO ]   POLI [ EBI - ARRAY_EXPRESS ]   POLI [ SEEK ]   POLI [ MEM ]
Gene Expression Viewer (FireBrowse)POLI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11201
GTEX Portal (Tissue expression)POLI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNA4
Splice isoforms : SwissVarQ9UNA4
Catalytic activity : Enzyme2.7.7.7 [ Enzyme-Expasy ]   2.7.7.72.7.7.7 [ IntEnz-EBI ]   2.7.7.7 [ BRENDA ]   2.7.7.7 [ KEGG ]   
PhosPhoSitePlusQ9UNA4
Domaine pattern : Prosite (Expaxy)UMUC (PS50173)   
Domains : Interpro (EBI)DNA_pol_Y-fam_little_finger    UmuC   
Domain families : Pfam (Sanger)IMS (PF00817)    IMS_C (PF11799)   
Domain families : Pfam (NCBI)pfam00817    pfam11799   
Conserved Domain (NCBI)POLI
DMDM Disease mutations11201
Blocks (Seattle)POLI
PDB (SRS)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
PDB (PDBSum)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
PDB (IMB)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
PDB (RSDB)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
Structural Biology KnowledgeBase1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
SCOP (Structural Classification of Proteins)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
CATH (Classification of proteins structures)1T3N    1ZET    2ALZ    2DPI    2DPJ    2FLL    2FLN    2FLP    2KHU    2KHW    2KTF    2L0F    2L0G    2MBB    3EPG    3EPI    3G6V    3G6X    3G6Y    3GV5    3GV7    3GV8    3H40    3H4B    3H4D    3NGD    3OSN    3Q8P    3Q8Q    3Q8R    3Q8S    4EBC    4EBD    4EBE    4EYH    4EYI    4FS1    4FS2   
SuperfamilyQ9UNA4
Human Protein AtlasENSG00000101751
Peptide AtlasQ9UNA4
HPRD16094
IPIIPI00296840   IPI00922925   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNA4
IntAct (EBI)Q9UNA4
FunCoupENSG00000101751
BioGRIDPOLI
STRING (EMBL)POLI
ZODIACPOLI
Ontologies - Pathways
QuickGOQ9UNA4
Ontology : AmiGOdamaged DNA binding  DNA-directed DNA polymerase activity  protein binding  intracellular  nucleus  nucleoplasm  DNA replication  DNA repair  translesion synthesis  error-prone translesion synthesis  intracellular membrane-bounded organelle  metal ion binding  
Ontology : EGO-EBIdamaged DNA binding  DNA-directed DNA polymerase activity  protein binding  intracellular  nucleus  nucleoplasm  DNA replication  DNA repair  translesion synthesis  error-prone translesion synthesis  intracellular membrane-bounded organelle  metal ion binding  
Pathways : KEGGFanconi anemia pathway   
NDEx NetworkPOLI
Atlas of Cancer Signalling NetworkPOLI
Wikipedia pathwaysPOLI
Orthology - Evolution
OrthoDB11201
GeneTree (enSembl)ENSG00000101751
Phylogenetic Trees/Animal Genes : TreeFamPOLI
HOVERGENQ9UNA4
HOGENOMQ9UNA4
Homologs : HomoloGenePOLI
Homology/Alignments : Family Browser (UCSC)POLI
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLI
dbVarPOLI
ClinVarPOLI
1000_GenomesPOLI 
Exome Variant ServerPOLI
ExAC (Exome Aggregation Consortium)POLI (select the gene name)
Genetic variants : HAPMAP11201
Genomic Variants (DGV)POLI [DGVbeta]
DECIPHER (Syndromes)18:51795849-51824604  ENSG00000101751
CONAN: Copy Number AnalysisPOLI 
Mutations
ICGC Data PortalPOLI 
TCGA Data PortalPOLI 
Broad Tumor PortalPOLI
OASIS PortalPOLI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POLI
DgiDB (Drug Gene Interaction Database)POLI
DoCM (Curated mutations)POLI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLI (select a term)
intoGenPOLI
Cancer3DPOLI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605252   
Orphanet
MedgenPOLI
Genetic Testing Registry POLI
NextProtQ9UNA4 [Medical]
TSGene11201
GENETestsPOLI
Huge Navigator POLI [HugePedia]
snp3D : Map Gene to Disease11201
BioCentury BCIQPOLI
ClinGenPOLI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11201
Chemical/Pharm GKB GenePA33502
Clinical trialPOLI
Miscellaneous
canSAR (ICR)POLI (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLI
EVEXPOLI
GoPubMedPOLI
iHOPPOLI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:22:08 CET 2017

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