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POLM (polymerase (DNA) mu)

Identity

Alias_namespolymerase (DNA directed), mu
polymerase (DNA) mu
Alias_symbol (synonym)Tdt-N
Other aliasPol Mu
HGNC (Hugo) POLM
LocusID (NCBI) 27434
Atlas_Id 43421
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44111661 and ends at 44122139 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLM   9185
Cards
Entrez_Gene (NCBI)POLM  27434  polymerase (DNA) mu
AliasesPol; Tdt-N
GeneCards (Weizmann)POLM
Ensembl hg19 (Hinxton)ENSG00000122678 [Gene_View]  chr7:44111661-44122139 [Contig_View]  POLM [Vega]
Ensembl hg38 (Hinxton)ENSG00000122678 [Gene_View]  chr7:44111661-44122139 [Contig_View]  POLM [Vega]
ICGC DataPortalENSG00000122678
TCGA cBioPortalPOLM
AceView (NCBI)POLM
Genatlas (Paris)POLM
WikiGenes27434
SOURCE (Princeton)POLM
Genetics Home Reference (NIH)POLM
Genomic and cartography
GoldenPath hg19 (UCSC)POLM  -     chr7:44111661-44122139 -  7p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POLM  -     7p13   [Description]    (hg38-Dec_2013)
EnsemblPOLM - 7p13 [CytoView hg19]  POLM - 7p13 [CytoView hg38]
Mapping of homologs : NCBIPOLM [Mapview hg19]  POLM [Mapview hg38]
OMIM606344   
Gene and transcription
Genbank (Entrez)AA917987 AF176097 AJ131891 AK023002 AK092801
RefSeq transcript (Entrez)NM_001284330 NM_001284331 NM_013284
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)POLM
Cluster EST : UnigeneHs.598038 [ NCBI ]
CGAP (NCI)Hs.598038
Alternative Splicing GalleryENSG00000122678
Gene ExpressionPOLM [ NCBI-GEO ]   POLM [ EBI - ARRAY_EXPRESS ]   POLM [ SEEK ]   POLM [ MEM ]
Gene Expression Viewer (FireBrowse)POLM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27434
GTEX Portal (Tissue expression)POLM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP87
Splice isoforms : SwissVarQ9NP87
Catalytic activity : Enzyme2.7.7.7 [ Enzyme-Expasy ]   2.7.7.72.7.7.7 [ IntEnz-EBI ]   2.7.7.7 [ BRENDA ]   2.7.7.7 [ KEGG ]   
PhosPhoSitePlusQ9NP87
Domaine pattern : Prosite (Expaxy)BRCT (PS50172)    DNA_POLYMERASE_X (PS00522)   
Domains : Interpro (EBI)BRCT_dom    DNA-dir_DNA_pol_X    DNA/RNApol_mu    DNA_pol-X_BS    DNA_pol_b-like_N    DNA_pol_B_palm_palm    DNA_pol_lambd_fingers_domain    DNA_pol_X    DNA_pol_X_lyase_dom    PolB_thumb    TdT/Mu   
Domain families : Pfam (Sanger)DNA_pol_B_palm (PF14792)    DNA_pol_B_thumb (PF14791)    DNA_pol_lambd_f (PF10391)    HHH_8 (PF14716)   
Domain families : Pfam (NCBI)pfam14792    pfam14791    pfam10391    pfam14716   
Domain families : Smart (EMBL)BRCT (SM00292)  POLXc (SM00483)  
Conserved Domain (NCBI)POLM
DMDM Disease mutations27434
Blocks (Seattle)POLM
PDB (SRS)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
PDB (PDBSum)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
PDB (IMB)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
PDB (RSDB)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
Structural Biology KnowledgeBase2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
SCOP (Structural Classification of Proteins)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
CATH (Classification of proteins structures)2DUN    2HTF    4LZD    4LZG    4M04    4M0A    4YCX    4YD1    4YD2   
SuperfamilyQ9NP87
Human Protein AtlasENSG00000122678
Peptide AtlasQ9NP87
HPRD16208
IPIIPI00002325   IPI00909489   IPI00975583   IPI00927350   IPI00903017   IPI00924487   IPI00654676   IPI00924893   IPI00441086   IPI00926153   IPI00926540   IPI00926784   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP87
IntAct (EBI)Q9NP87
FunCoupENSG00000122678
BioGRIDPOLM
STRING (EMBL)POLM
ZODIACPOLM
Ontologies - Pathways
QuickGOQ9NP87
Ontology : AmiGODNA binding  DNA-directed DNA polymerase activity  protein binding  nucleoplasm  double-strand break repair via nonhomologous end joining  DNA recombination  somatic hypermutation of immunoglobulin genes  B cell differentiation  metal ion binding  DNA biosynthetic process  DNA biosynthetic process  
Ontology : EGO-EBIDNA binding  DNA-directed DNA polymerase activity  protein binding  nucleoplasm  double-strand break repair via nonhomologous end joining  DNA recombination  somatic hypermutation of immunoglobulin genes  B cell differentiation  metal ion binding  DNA biosynthetic process  DNA biosynthetic process  
Pathways : KEGGNon-homologous end-joining   
NDEx NetworkPOLM
Atlas of Cancer Signalling NetworkPOLM
Wikipedia pathwaysPOLM
Orthology - Evolution
OrthoDB27434
GeneTree (enSembl)ENSG00000122678
Phylogenetic Trees/Animal Genes : TreeFamPOLM
HOVERGENQ9NP87
HOGENOMQ9NP87
Homologs : HomoloGenePOLM
Homology/Alignments : Family Browser (UCSC)POLM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLM
dbVarPOLM
ClinVarPOLM
1000_GenomesPOLM 
Exome Variant ServerPOLM
ExAC (Exome Aggregation Consortium)POLM (select the gene name)
Genetic variants : HAPMAP27434
Genomic Variants (DGV)POLM [DGVbeta]
DECIPHER (Syndromes)7:44111661-44122139  ENSG00000122678
CONAN: Copy Number AnalysisPOLM 
Mutations
ICGC Data PortalPOLM 
TCGA Data PortalPOLM 
Broad Tumor PortalPOLM
OASIS PortalPOLM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POLM
DgiDB (Drug Gene Interaction Database)POLM
DoCM (Curated mutations)POLM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLM (select a term)
intoGenPOLM
Cancer3DPOLM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606344   
Orphanet
MedgenPOLM
Genetic Testing Registry POLM
NextProtQ9NP87 [Medical]
TSGene27434
GENETestsPOLM
Huge Navigator POLM [HugePedia]
snp3D : Map Gene to Disease27434
BioCentury BCIQPOLM
ClinGenPOLM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27434
Chemical/Pharm GKB GenePA33505
Clinical trialPOLM
Miscellaneous
canSAR (ICR)POLM (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLM
EVEXPOLM
GoPubMedPOLM
iHOPPOLM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:59 CEST 2017

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