Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

POLR1D (RNA polymerase I and III subunit D)

Identity

Alias_namespolymerase (RNA) I polypeptide D, 16kDa
Alias_symbol (synonym)RPAC2
RPA16
RPO1-3
RPA9
MGC9850
Other aliasAC19
POLR1C
RPC16
TCS2
HGNC (Hugo) POLR1D
LocusID (NCBI) 51082
Atlas_Id 72049
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27620743 and ends at 27667422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
POLR1D (13q12.2) / CHORDC1 (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLR1D   20422
Cards
Entrez_Gene (NCBI)POLR1D  51082  RNA polymerase I and III subunit D
AliasesAC19; POLR1C; RPA16; RPA9; 
RPAC2; RPC16; RPO1-3; TCS2
GeneCards (Weizmann)POLR1D
Ensembl hg19 (Hinxton)ENSG00000186184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186184 [Gene_View]  ENSG00000186184 [Sequence]  chr13:27620743-27667422 [Contig_View]  POLR1D [Vega]
ICGC DataPortalENSG00000186184
TCGA cBioPortalPOLR1D
AceView (NCBI)POLR1D
Genatlas (Paris)POLR1D
WikiGenes51082
SOURCE (Princeton)POLR1D
Genetics Home Reference (NIH)POLR1D
Genomic and cartography
GoldenPath hg38 (UCSC)POLR1D  -     chr13:27620743-27667422 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POLR1D  -     13q12.2   [Description]    (hg19-Feb_2009)
GoldenPathPOLR1D - 13q12.2 [CytoView hg19]  POLR1D - 13q12.2 [CytoView hg38]
ImmunoBaseENSG00000186184
Mapping of homologs : NCBIPOLR1D [Mapview hg19]  POLR1D [Mapview hg38]
OMIM613715   613717   
Gene and transcription
Genbank (Entrez)AF077044 AF131855 AK000623 AK097973 AK307356
RefSeq transcript (Entrez)NM_001206559 NM_015972 NM_152705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POLR1D
Cluster EST : UnigeneHs.735744 [ NCBI ]
CGAP (NCI)Hs.735744
Alternative Splicing GalleryENSG00000186184
Gene ExpressionPOLR1D [ NCBI-GEO ]   POLR1D [ EBI - ARRAY_EXPRESS ]   POLR1D [ SEEK ]   POLR1D [ MEM ]
Gene Expression Viewer (FireBrowse)POLR1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)51082
GTEX Portal (Tissue expression)POLR1D
Human Protein AtlasENSG00000186184-POLR1D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POLR1D
DMDM Disease mutations51082
Blocks (Seattle)POLR1D
Human Protein Atlas [tissue]ENSG00000186184-POLR1D [tissue]
HPRD14717
IPIIPI00032439   IPI00643892   IPI01018343   
Protein Interaction databases
FunCoupENSG00000186184
BioGRIDPOLR1D
STRING (EMBL)POLR1D
ZODIACPOLR1D
Ontologies - Pathways
Huge Navigator POLR1D [HugePedia]
snp3D : Map Gene to Disease51082
BioCentury BCIQPOLR1D
ClinGenPOLR1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51082
Chemical/Pharm GKB GenePA134914527
Clinical trialPOLR1D
Miscellaneous
canSAR (ICR)POLR1D (select the gene name)
DataMed IndexPOLR1D
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLR1D
EVEXPOLR1D
GoPubMedPOLR1D
iHOPPOLR1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 16:45:25 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.