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POLR1D (RNA polymerase I subunit D)

Identity

Alias_namespolymerase (RNA) I polypeptide D, 16kDa
Alias_symbol (synonym)RPAC2
RPA16
RPO1-3
RPA9
MGC9850
Other aliasAC19
POLR1C
RPC16
TCS2
HGNC (Hugo) POLR1D
LocusID (NCBI) 51082
Atlas_Id 72049
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27620743 and ends at 27667422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLR1D (13q12.2) / CHORDC1 (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLR1D   20422
Cards
Entrez_Gene (NCBI)POLR1D  51082  RNA polymerase I subunit D
AliasesAC19; POLR1C; RPA16; RPA9; 
RPAC2; RPC16; RPO1-3; TCS2
GeneCards (Weizmann)POLR1D
Ensembl hg19 (Hinxton)ENSG00000186184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186184 [Gene_View]  chr13:27620743-27667422 [Contig_View]  POLR1D [Vega]
ICGC DataPortalENSG00000186184
TCGA cBioPortalPOLR1D
AceView (NCBI)POLR1D
Genatlas (Paris)POLR1D
WikiGenes51082
SOURCE (Princeton)POLR1D
Genetics Home Reference (NIH)POLR1D
Genomic and cartography
GoldenPath hg38 (UCSC)POLR1D  -     chr13:27620743-27667422 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POLR1D  -     13q12.2   [Description]    (hg19-Feb_2009)
EnsemblPOLR1D - 13q12.2 [CytoView hg19]  POLR1D - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIPOLR1D [Mapview hg19]  POLR1D [Mapview hg38]
OMIM613715   613717   
Gene and transcription
Genbank (Entrez)AF077044 AF131855 AK000623 AK097973 AK307356
RefSeq transcript (Entrez)NM_001206559 NM_015972 NM_152705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POLR1D
Cluster EST : UnigeneHs.735744 [ NCBI ]
CGAP (NCI)Hs.735744
Alternative Splicing GalleryENSG00000186184
Gene ExpressionPOLR1D [ NCBI-GEO ]   POLR1D [ EBI - ARRAY_EXPRESS ]   POLR1D [ SEEK ]   POLR1D [ MEM ]
Gene Expression Viewer (FireBrowse)POLR1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51082
GTEX Portal (Tissue expression)POLR1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2S0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2S0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2S0
Splice isoforms : SwissVarQ9Y2S0
PhosPhoSitePlusQ9Y2S0
Domaine pattern : Prosite (Expaxy)RNA_POL_L_13KD (PS01154)   
Domains : Interpro (EBI)RBP11-like_dimer    RNA_pol_Rpb11_13-16kDa_CS    RNAP_AC19   
Domain families : Pfam (Sanger)RNA_pol_L_2 (PF13656)   
Domain families : Pfam (NCBI)pfam13656   
Conserved Domain (NCBI)POLR1D
DMDM Disease mutations51082
Blocks (Seattle)POLR1D
SuperfamilyQ9Y2S0
Human Protein AtlasENSG00000186184
Peptide AtlasQ9Y2S0
HPRD14717
IPIIPI00032439   IPI00643892   IPI01018343   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2S0
IntAct (EBI)Q9Y2S0
FunCoupENSG00000186184
BioGRIDPOLR1D
STRING (EMBL)POLR1D
ZODIACPOLR1D
Ontologies - Pathways
QuickGOQ9Y2S0
Ontology : AmiGORNA polymerase I activity  RNA polymerase III activity  DNA binding  protein binding  nucleoplasm  DNA-directed RNA polymerase III complex  DNA-directed RNA polymerase I complex  cytosol  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase III promoter  positive regulation of type I interferon production  positive regulation of gene expression, epigenetic  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase I activity  RNA polymerase III activity  DNA binding  protein binding  nucleoplasm  DNA-directed RNA polymerase III complex  DNA-directed RNA polymerase I complex  cytosol  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase III promoter  positive regulation of type I interferon production  positive regulation of gene expression, epigenetic  protein dimerization activity  
Pathways : BIOCARTATumor Suppressor Arf Inhibits Ribosomal Biogenesis [Genes]   
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    RNA polymerase    Cytosolic DNA-sensing pathway    Epstein-Barr virus infection   
NDEx NetworkPOLR1D
Atlas of Cancer Signalling NetworkPOLR1D
Wikipedia pathwaysPOLR1D
Orthology - Evolution
OrthoDB51082
GeneTree (enSembl)ENSG00000186184
Phylogenetic Trees/Animal Genes : TreeFamPOLR1D
HOVERGENQ9Y2S0
HOGENOMQ9Y2S0
Homologs : HomoloGenePOLR1D
Homology/Alignments : Family Browser (UCSC)POLR1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLR1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLR1D
dbVarPOLR1D
ClinVarPOLR1D
1000_GenomesPOLR1D 
Exome Variant ServerPOLR1D
ExAC (Exome Aggregation Consortium)POLR1D (select the gene name)
Genetic variants : HAPMAP51082
Genomic Variants (DGV)POLR1D [DGVbeta]
DECIPHERPOLR1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOLR1D 
Mutations
ICGC Data PortalPOLR1D 
TCGA Data PortalPOLR1D 
Broad Tumor PortalPOLR1D
OASIS PortalPOLR1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLR1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLR1D
LOVD (Leiden Open Variation Database)Treacher Collins syndrome variant database
BioMutasearch POLR1D
DgiDB (Drug Gene Interaction Database)POLR1D
DoCM (Curated mutations)POLR1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLR1D (select a term)
intoGenPOLR1D
Cancer3DPOLR1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613715    613717   
Orphanet293   
MedgenPOLR1D
Genetic Testing Registry POLR1D
NextProtQ9Y2S0 [Medical]
TSGene51082
GENETestsPOLR1D
Target ValidationPOLR1D
Huge Navigator POLR1D [HugePedia]
snp3D : Map Gene to Disease51082
BioCentury BCIQPOLR1D
ClinGenPOLR1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51082
Chemical/Pharm GKB GenePA134914527
Clinical trialPOLR1D
Miscellaneous
canSAR (ICR)POLR1D (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLR1D
EVEXPOLR1D
GoPubMedPOLR1D
iHOPPOLR1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:54 CEST 2017

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