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POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)

Identity

Other namesHRBP14.4
POLRF
RPABC2
RPB14.4
RPB6
HGNC (Hugo) POLR2F
LocusID (NCBI) 5435
Location 22q13.1
Location_base_pair Starts at 38349674 and ends at 38365319 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)POLR2F   9193
Entrez_Gene (NCBI)POLR2F  5435  polymerase (RNA) II (DNA directed) polypeptide F
Cards
GeneCards (Weizmann)POLR2F
Ensembl (Hinxton)ENSG00000100142 [Gene_View]  chr22:38349674-38365319 [Contig_View]  POLR2F [Vega]
AceView (NCBI)POLR2F
Genatlas (Paris)POLR2F
SOURCE (Stanford)NM_021974
Genomic and cartography
GoldenPath (UCSC)POLR2F  -  22q13.1   chr22:38349674-38365319 +  22q13.1   [Description]    (hg19-Feb_2009)
EnsemblPOLR2F - 22q13.1 [CytoView]
Mapping of homologs : NCBIPOLR2F [Mapview]
OMIM604414   
Gene and transcription
Genbank (Entrez)AK094034 AK311128 AK311831 BC003582 BU634038
RefSeq transcript (SRS)NM_021974
RefSeq transcript (Entrez)NM_021974
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)POLR2F
Cluster EST : UnigeneHs.436578 [ SRS ] Hs.436578 [ NCBI ]
CGAP (NCI)Hs.436578
Alternative Splicing : Fast-db (Paris)GSHG0020009
Alternative Splicing GalleryENSG00000100142
Gene ExpressionPOLR2F [ NCBI-GEO ]   POLR2F [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61218 (SRS) P61218 (Uniprot)
NextProtP61218
With graphics : InterProP61218
Splice isoforms : SwissVarP61218(Swissvar)
Domaine pattern : Prosite (SRS)RNA_POL_K_14KD (PS01111)   
Domaine pattern : Prosite (Expaxy)RNA_POL_K_14KD (PS01111)   
Domains : Interpro (SRS)DNA-dir_RNA_polK_14-18kDa_CS    RNA_poly_omega/K/RPABC2    RNAP_K/Rpb6    RNAP_RPB6_omega   
Domains : Interpro (EBI)DNA-dir_RNA_polK_14-18kDa_CS    RNA_poly_omega/K/RPABC2    RNAP_K/Rpb6    RNAP_RPB6_omega   
Related proteins : CluSTrP61218
Domain families : Pfam (SRS)RNA_pol_Rpb6 (PF01192)   
Domain families : Pfam (Sanger)RNA_pol_Rpb6 (PF01192)   
Domain families : Pfam (NCBI)pfam01192   
DMDM5435
Blocks (Seattle)P61218
PDB (SRS)1QKL   
PDB (PDBSum)1QKL   
PDB (IMB)1QKL   
PDB (RSDB)1QKL   
Human Protein AtlasENSG00000100142
HPRD05105
IPIIPI00015119   IPI00879602   IPI00880079   IPI00877920   IPI00879766   IPI00878600   
Protein Interaction databases
DIP (DOE-UCLA)P61218
IntAct (EBI)P61218
FunCoupENSG00000100142
REACTOMEPOLR2F
Protein Interaction Database5435
BioGRIDPOLR2F
InParanoidP61218
Interologous Interaction database P61218
IntegromeDBPOLR2F
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)POLR2F
SNP (GeneSNP Utah)POLR2F
SNP : HGBasePOLR2F
Genetic variants : HAPMAPPOLR2F
Somatic Mutations in Cancer : COSMICPOLR2F 
CONAN: Copy Number AnalysisPOLR2F 
Mutations and Diseases : HGMDPOLR2F
OMIM604414   
GENETests604414   
Disease Genetic AssociationPOLR2F
Huge Navigator POLR2F [HugePedia]  POLR2F [HugeCancerGEM]
Genomic VariantsPOLR2F  POLR2F [DGVbeta]
ClinVarPOLR2F
snp3D : Map Gene to Disease5435
General knowledge
Homologs : HomoloGenePOLR2F
Homology/Alignments : Family Browser (UCSC)POLR2F
Phylogenetic Trees/Animal Genes : TreeFamPOLR2F
Chemical/Protein Interactions : CTD5435
Chemical/Pharm GKB GenePA33513
Clinical trialPOLR2F
Cancer Resource (Charite)ENSG00000100142
Ontology : AmiGOmRNA splicing, via spliceosome  DNA binding  DNA-directed RNA polymerase activity  protein kinase activity  nucleus  nucleoplasm  DNA-directed RNA polymerase II, core complex  nucleolus  DNA repair  transcription-coupled nucleotide-excision repair  nucleotide-excision repair  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  7-methylguanosine mRNA capping  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  protein phosphorylation  RNA splicing  gene expression  viral reproduction  viral reproductive process  positive regulation of viral transcription  
Ontology : EGO-EBImRNA splicing, via spliceosome  DNA binding  DNA-directed RNA polymerase activity  protein kinase activity  nucleus  nucleoplasm  DNA-directed RNA polymerase II, core complex  nucleolus  DNA repair  transcription-coupled nucleotide-excision repair  nucleotide-excision repair  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  7-methylguanosine mRNA capping  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  protein phosphorylation  RNA splicing  gene expression  viral reproduction  viral reproductive process  positive regulation of viral transcription  
Pathways : KEGGRNA polymerasePurine metabolismPyrimidine metabolism
Other databases
Probes
Litterature
PubMed107 Pubmed reference(s) in Entrez
PubGenePOLR2F
iHOPPOLR2F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:28:15 CEST 2013
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