Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

POLR2M (RNA polymerase II subunit M)

Identity

Alias_namesGRINL1A
glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A
polymerase (RNA) II (DNA directed) polypeptide M
polymerase (RNA) II subunit M
Alias_symbol (synonym)Gdown
Gdown1
GCOM1
Other alias
HGNC (Hugo) POLR2M
LocusID (NCBI) 81488
Atlas_Id 72054
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 57706521 and ends at 57717557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLR2M (15q21.3) / ADGRL1 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLR2M   14862
Cards
Entrez_Gene (NCBI)POLR2M  81488  RNA polymerase II subunit M
AliasesGCOM1; GRINL1A; Gdown; Gdown1
GeneCards (Weizmann)POLR2M
Ensembl hg19 (Hinxton)ENSG00000255529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255529 [Gene_View]  chr15:57706521-57717557 [Contig_View]  POLR2M [Vega]
ICGC DataPortalENSG00000255529
TCGA cBioPortalPOLR2M
AceView (NCBI)POLR2M
Genatlas (Paris)POLR2M
WikiGenes81488
SOURCE (Princeton)POLR2M
Genetics Home Reference (NIH)POLR2M
Genomic and cartography
GoldenPath hg38 (UCSC)POLR2M  -     chr15:57706521-57717557 +  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POLR2M  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblPOLR2M - 15q21.3 [CytoView hg19]  POLR2M - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIPOLR2M [Mapview hg19]  POLR2M [Mapview hg38]
OMIM606485   
Gene and transcription
Genbank (Entrez)AF086209 AF326773 AK074767 AK074955 AK128618
RefSeq transcript (Entrez)NM_001018102 NM_015532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POLR2M
Cluster EST : UnigeneHs.702937 [ NCBI ]
CGAP (NCI)Hs.702937
Alternative Splicing GalleryENSG00000255529
Gene ExpressionPOLR2M [ NCBI-GEO ]   POLR2M [ EBI - ARRAY_EXPRESS ]   POLR2M [ SEEK ]   POLR2M [ MEM ]
Gene Expression Viewer (FireBrowse)POLR2M [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81488
GTEX Portal (Tissue expression)POLR2M
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6EEV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6EEV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6EEV4
Splice isoforms : SwissVarQ6EEV4
PhosPhoSitePlusQ6EEV4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POLR2M
DMDM Disease mutations81488
Blocks (Seattle)POLR2M
SuperfamilyQ6EEV4
Human Protein AtlasENSG00000255529
Peptide AtlasQ6EEV4
HPRD07575
IPIIPI00552141   IPI00443687   IPI00816688   IPI00455444   IPI00455446   IPI00936485   
Protein Interaction databases
DIP (DOE-UCLA)Q6EEV4
IntAct (EBI)Q6EEV4
FunCoupENSG00000255529
BioGRIDPOLR2M
STRING (EMBL)POLR2M
ZODIACPOLR2M
Ontologies - Pathways
QuickGOQ6EEV4
Ontology : AmiGODNA-directed 5'-3' RNA polymerase activity  nuclear envelope  DNA-directed RNA polymerase II, holoenzyme  RNA biosynthetic process  neuronal cell body  maintenance of ER location  
Ontology : EGO-EBIDNA-directed 5'-3' RNA polymerase activity  nuclear envelope  DNA-directed RNA polymerase II, holoenzyme  RNA biosynthetic process  neuronal cell body  maintenance of ER location  
NDEx NetworkPOLR2M
Atlas of Cancer Signalling NetworkPOLR2M
Wikipedia pathwaysPOLR2M
Orthology - Evolution
OrthoDB81488
GeneTree (enSembl)ENSG00000255529
Phylogenetic Trees/Animal Genes : TreeFamPOLR2M
HOVERGENQ6EEV4
HOGENOMQ6EEV4
Homologs : HomoloGenePOLR2M
Homology/Alignments : Family Browser (UCSC)POLR2M
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLR2M [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLR2M
dbVarPOLR2M
ClinVarPOLR2M
1000_GenomesPOLR2M 
Exome Variant ServerPOLR2M
ExAC (Exome Aggregation Consortium)POLR2M (select the gene name)
Genetic variants : HAPMAP81488
Genomic Variants (DGV)POLR2M [DGVbeta]
DECIPHERPOLR2M [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOLR2M 
Mutations
ICGC Data PortalPOLR2M 
TCGA Data PortalPOLR2M 
Broad Tumor PortalPOLR2M
OASIS PortalPOLR2M [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLR2M  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLR2M
BioMutasearch POLR2M
DgiDB (Drug Gene Interaction Database)POLR2M
DoCM (Curated mutations)POLR2M (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLR2M (select a term)
intoGenPOLR2M
Cancer3DPOLR2M(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606485   
Orphanet
MedgenPOLR2M
Genetic Testing Registry POLR2M
NextProtQ6EEV4 [Medical]
TSGene81488
GENETestsPOLR2M
Target ValidationPOLR2M
Huge Navigator POLR2M [HugePedia]
snp3D : Map Gene to Disease81488
BioCentury BCIQPOLR2M
ClinGenPOLR2M
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81488
Chemical/Pharm GKB GenePA28986
Clinical trialPOLR2M
Miscellaneous
canSAR (ICR)POLR2M (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLR2M
EVEXPOLR2M
GoPubMedPOLR2M
iHOPPOLR2M
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:36:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.