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POLR3D (polymerase (RNA) III (DNA directed) polypeptide D, 44kDa)

Identity

Other namesBN51T
RPC4
RPC53
TSBN51
HGNC (Hugo) POLR3D
LocusID (NCBI) 661
Location 8p21.3
Location_base_pair Starts at 22102619 and ends at 22108680 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)POLR3D   1080
Entrez_Gene (NCBI)POLR3D  661  polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
Cards
GeneCards (Weizmann)POLR3D
Ensembl (Hinxton)ENSG00000168495 [Gene_View]  chr8:22102619-22108680 [Contig_View]  POLR3D [Vega]
AceView (NCBI)POLR3D
Genatlas (Paris)POLR3D
SOURCE (Stanford)NM_001722
Genomic and cartography
GoldenPath (UCSC)POLR3D  -  8p21.3   chr8:22102619-22108680 +  8p21.3   [Description]    (hg19-Feb_2009)
EnsemblPOLR3D - 8p21.3 [CytoView]
Mapping of homologs : NCBIPOLR3D [Mapview]
OMIM187280   
Gene and transcription
Genbank (Entrez)AF346574 AK026588 AK295725 AY092086 BC000516
RefSeq transcript (SRS)NM_001722
RefSeq transcript (Entrez)NM_001722
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839127 NW_004078035
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839127 NW_004078035
Consensus coding sequences : CCDS (NCBI)POLR3D
Cluster EST : UnigeneHs.148342 [ SRS ] Hs.148342 [ NCBI ]
CGAP (NCI)Hs.148342
Alternative Splicing : Fast-db (Paris)GSHG0028872
Alternative Splicing GalleryENSG00000168495
Gene ExpressionPOLR3D [ NCBI-GEO ]   POLR3D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05423 (SRS) P05423 (Uniprot)
NextProtP05423
With graphics : InterProP05423
Splice isoforms : SwissVarP05423(Swissvar)
Domains : Interpro (SRS)RNA_pol_III_Rpc4   
Domains : Interpro (EBI)RNA_pol_III_Rpc4   
Related proteins : CluSTrP05423
Domain families : Pfam (SRS)RNA_pol_Rpc4 (PF05132)   
Domain families : Pfam (Sanger)RNA_pol_Rpc4 (PF05132)   
Domain families : Pfam (NCBI)pfam05132   
DMDM661
Blocks (Seattle)P05423
Human Protein AtlasENSG00000168495
HPRD01755
IPIIPI00215978   IPI00982006   IPI00982571   
Protein Interaction databases
DIP (DOE-UCLA)P05423
IntAct (EBI)P05423
FunCoupENSG00000168495
REACTOMEPOLR3D
Protein Interaction Database661
BioGRIDPOLR3D
InParanoidP05423
Interologous Interaction database P05423
IntegromeDBPOLR3D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)POLR3D
SNP (GeneSNP Utah)POLR3D
SNP : HGBasePOLR3D
Genetic variants : HAPMAPPOLR3D
Somatic Mutations in Cancer : COSMICPOLR3D 
CONAN: Copy Number AnalysisPOLR3D 
Mutations and Diseases : HGMDPOLR3D
OMIM187280   
GENETests187280   
Disease Genetic AssociationPOLR3D
Huge Navigator POLR3D [HugePedia]  POLR3D [HugeCancerGEM]
Genomic VariantsPOLR3D  POLR3D [DGVbeta]
snp3D : Map Gene to Disease661
General knowledge
Homologs : HomoloGenePOLR3D
Homology/Alignments : Family Browser (UCSC)POLR3D
Phylogenetic Trees/Animal Genes : TreeFamPOLR3D
Chemical/Protein Interactions : CTD661
Chemical/Pharm GKB GenePA25390
Clinical trialPOLR3D
Cancer Resource (Charite)ENSG00000168495
Ontology : AmiGODNA binding  DNA-directed RNA polymerase activity  nucleoplasm  DNA-directed RNA polymerase III complex  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  gene expression  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Ontology : EGO-EBIDNA binding  DNA-directed RNA polymerase activity  nucleoplasm  DNA-directed RNA polymerase III complex  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  gene expression  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGenePOLR3D
iHOPPOLR3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:07 CEST 2013
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