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POLR3D (polymerase (RNA) III subunit D)

Identity

Alias_namesBN51T
BN51 (BHK21) temperature sensitivity complementing
polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
Alias_symbol (synonym)TSBN51
RPC4
Other aliasRPC53
HGNC (Hugo) POLR3D
LocusID (NCBI) 661
Atlas_Id 41783
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22102619 and ends at 22108680 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLR3D   1080
Cards
Entrez_Gene (NCBI)POLR3D  661  polymerase (RNA) III subunit D
AliasesBN51T; RPC4; RPC53; TSBN51
GeneCards (Weizmann)POLR3D
Ensembl hg19 (Hinxton)ENSG00000168495 [Gene_View]  chr8:22102619-22108680 [Contig_View]  POLR3D [Vega]
Ensembl hg38 (Hinxton)ENSG00000168495 [Gene_View]  chr8:22102619-22108680 [Contig_View]  POLR3D [Vega]
ICGC DataPortalENSG00000168495
TCGA cBioPortalPOLR3D
AceView (NCBI)POLR3D
Genatlas (Paris)POLR3D
WikiGenes661
SOURCE (Princeton)POLR3D
Genetics Home Reference (NIH)POLR3D
Genomic and cartography
GoldenPath hg19 (UCSC)POLR3D  -     chr8:22102619-22108680 +  8p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POLR3D  -     8p21.3   [Description]    (hg38-Dec_2013)
EnsemblPOLR3D - 8p21.3 [CytoView hg19]  POLR3D - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIPOLR3D [Mapview hg19]  POLR3D [Mapview hg38]
OMIM187280   
Gene and transcription
Genbank (Entrez)AF346574 AK026588 AK125346 AK295725 AY092086
RefSeq transcript (Entrez)NM_001722
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)POLR3D
Cluster EST : UnigeneHs.262907 [ NCBI ]
CGAP (NCI)Hs.262907
Alternative Splicing GalleryENSG00000168495
Gene ExpressionPOLR3D [ NCBI-GEO ]   POLR3D [ EBI - ARRAY_EXPRESS ]   POLR3D [ SEEK ]   POLR3D [ MEM ]
Gene Expression Viewer (FireBrowse)POLR3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)661
GTEX Portal (Tissue expression)POLR3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05423   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05423  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05423
Splice isoforms : SwissVarP05423
PhosPhoSitePlusP05423
Domains : Interpro (EBI)RPC4   
Domain families : Pfam (Sanger)RNA_pol_Rpc4 (PF05132)   
Domain families : Pfam (NCBI)pfam05132   
Conserved Domain (NCBI)POLR3D
DMDM Disease mutations661
Blocks (Seattle)POLR3D
SuperfamilyP05423
Human Protein AtlasENSG00000168495
Peptide AtlasP05423
HPRD01755
IPIIPI00215978   IPI00982006   IPI00982571   
Protein Interaction databases
DIP (DOE-UCLA)P05423
IntAct (EBI)P05423
FunCoupENSG00000168495
BioGRIDPOLR3D
STRING (EMBL)POLR3D
ZODIACPOLR3D
Ontologies - Pathways
QuickGOP05423
Ontology : AmiGOnuclear chromatin  RNA polymerase III activity  DNA binding  chromatin binding  nucleoplasm  DNA-directed RNA polymerase III complex  cytosol  transcription from RNA polymerase III promoter  positive regulation of type I interferon production  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Ontology : EGO-EBInuclear chromatin  RNA polymerase III activity  DNA binding  chromatin binding  nucleoplasm  DNA-directed RNA polymerase III complex  cytosol  transcription from RNA polymerase III promoter  positive regulation of type I interferon production  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    RNA polymerase    Cytosolic DNA-sensing pathway    Epstein-Barr virus infection   
NDEx NetworkPOLR3D
Atlas of Cancer Signalling NetworkPOLR3D
Wikipedia pathwaysPOLR3D
Orthology - Evolution
OrthoDB661
GeneTree (enSembl)ENSG00000168495
Phylogenetic Trees/Animal Genes : TreeFamPOLR3D
HOVERGENP05423
HOGENOMP05423
Homologs : HomoloGenePOLR3D
Homology/Alignments : Family Browser (UCSC)POLR3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLR3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLR3D
dbVarPOLR3D
ClinVarPOLR3D
1000_GenomesPOLR3D 
Exome Variant ServerPOLR3D
ExAC (Exome Aggregation Consortium)POLR3D (select the gene name)
Genetic variants : HAPMAP661
Genomic Variants (DGV)POLR3D [DGVbeta]
DECIPHER (Syndromes)8:22102619-22108680  ENSG00000168495
CONAN: Copy Number AnalysisPOLR3D 
Mutations
ICGC Data PortalPOLR3D 
TCGA Data PortalPOLR3D 
Broad Tumor PortalPOLR3D
OASIS PortalPOLR3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLR3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLR3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POLR3D
DgiDB (Drug Gene Interaction Database)POLR3D
DoCM (Curated mutations)POLR3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLR3D (select a term)
intoGenPOLR3D
Cancer3DPOLR3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM187280   
Orphanet
MedgenPOLR3D
Genetic Testing Registry POLR3D
NextProtP05423 [Medical]
TSGene661
GENETestsPOLR3D
Huge Navigator POLR3D [HugePedia]
snp3D : Map Gene to Disease661
BioCentury BCIQPOLR3D
ClinGenPOLR3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD661
Chemical/Pharm GKB GenePA25390
Clinical trialPOLR3D
Miscellaneous
canSAR (ICR)POLR3D (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLR3D
EVEXPOLR3D
GoPubMedPOLR3D
iHOPPOLR3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:03 CEST 2017

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