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POLR3F (polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa)

Identity

Alias_namespolymerase (RNA) III (DNA directed) polypeptide F (39 kDa)
Alias_symbol (synonym)RPC39
RPC6
Other alias
HGNC (Hugo) POLR3F
LocusID (NCBI) 10621
Atlas_Id 72058
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18448033 and ends at 18465292 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POLR3F   15763
Cards
Entrez_Gene (NCBI)POLR3F  10621  polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
AliasesRPC39; RPC6
GeneCards (Weizmann)POLR3F
Ensembl hg19 (Hinxton)ENSG00000132664 [Gene_View]  chr20:18448033-18465292 [Contig_View]  POLR3F [Vega]
Ensembl hg38 (Hinxton)ENSG00000132664 [Gene_View]  chr20:18448033-18465292 [Contig_View]  POLR3F [Vega]
ICGC DataPortalENSG00000132664
TCGA cBioPortalPOLR3F
AceView (NCBI)POLR3F
Genatlas (Paris)POLR3F
WikiGenes10621
SOURCE (Princeton)POLR3F
Genetics Home Reference (NIH)POLR3F
Genomic and cartography
GoldenPath hg19 (UCSC)POLR3F  -     chr20:18448033-18465292 +  20p11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POLR3F  -     20p11.23   [Description]    (hg38-Dec_2013)
EnsemblPOLR3F - 20p11.23 [CytoView hg19]  POLR3F - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIPOLR3F [Mapview hg19]  POLR3F [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096684 AK223298 AK290892 AK314838 BC012588
RefSeq transcript (Entrez)NM_001282526 NM_006466
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)POLR3F
Cluster EST : UnigeneHs.472227 [ NCBI ]
CGAP (NCI)Hs.472227
Alternative Splicing GalleryENSG00000132664
Gene ExpressionPOLR3F [ NCBI-GEO ]   POLR3F [ EBI - ARRAY_EXPRESS ]   POLR3F [ SEEK ]   POLR3F [ MEM ]
Gene Expression Viewer (FireBrowse)POLR3F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10621
GTEX Portal (Tissue expression)POLR3F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1D9
Splice isoforms : SwissVarQ9H1D9
PhosPhoSitePlusQ9H1D9
Domains : Interpro (EBI)RNA_pol_Rpc34    RNA_pol_Rpc34-like   
Domain families : Pfam (Sanger)RNA_pol_Rpc34 (PF05158)   
Domain families : Pfam (NCBI)pfam05158   
Conserved Domain (NCBI)POLR3F
DMDM Disease mutations10621
Blocks (Seattle)POLR3F
PDB (SRS)2DK5    2YU3   
PDB (PDBSum)2DK5    2YU3   
PDB (IMB)2DK5    2YU3   
PDB (RSDB)2DK5    2YU3   
Structural Biology KnowledgeBase2DK5    2YU3   
SCOP (Structural Classification of Proteins)2DK5    2YU3   
CATH (Classification of proteins structures)2DK5    2YU3   
SuperfamilyQ9H1D9
Human Protein AtlasENSG00000132664
Peptide AtlasQ9H1D9
HPRD15156
IPIIPI00100245   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1D9
IntAct (EBI)Q9H1D9
FunCoupENSG00000132664
BioGRIDPOLR3F
STRING (EMBL)POLR3F
ZODIACPOLR3F
Ontologies - Pathways
QuickGOQ9H1D9
Ontology : AmiGORNA polymerase III activity  DNA binding  DNA-directed RNA polymerase activity  protein binding  nucleoplasm  DNA-directed RNA polymerase III complex  DNA-directed RNA polymerase III complex  cytosol  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  gene expression  positive regulation of type I interferon production  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Ontology : EGO-EBIRNA polymerase III activity  DNA binding  DNA-directed RNA polymerase activity  protein binding  nucleoplasm  DNA-directed RNA polymerase III complex  DNA-directed RNA polymerase III complex  cytosol  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  transcription elongation from RNA polymerase III promoter  termination of RNA polymerase III transcription  gene expression  positive regulation of type I interferon production  positive regulation of interferon-beta production  innate immune response  positive regulation of innate immune response  defense response to virus  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    RNA polymerase    Cytosolic DNA-sensing pathway    Epstein-Barr virus infection   
NDEx NetworkPOLR3F
Atlas of Cancer Signalling NetworkPOLR3F
Wikipedia pathwaysPOLR3F
Orthology - Evolution
OrthoDB10621
GeneTree (enSembl)ENSG00000132664
Phylogenetic Trees/Animal Genes : TreeFamPOLR3F
HOVERGENQ9H1D9
HOGENOMQ9H1D9
Homologs : HomoloGenePOLR3F
Homology/Alignments : Family Browser (UCSC)POLR3F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOLR3F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POLR3F
dbVarPOLR3F
ClinVarPOLR3F
1000_GenomesPOLR3F 
Exome Variant ServerPOLR3F
ExAC (Exome Aggregation Consortium)POLR3F (select the gene name)
Genetic variants : HAPMAP10621
Genomic Variants (DGV)POLR3F [DGVbeta]
DECIPHER (Syndromes)20:18448033-18465292  ENSG00000132664
CONAN: Copy Number AnalysisPOLR3F 
Mutations
ICGC Data PortalPOLR3F 
TCGA Data PortalPOLR3F 
Broad Tumor PortalPOLR3F
OASIS PortalPOLR3F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOLR3F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOLR3F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POLR3F
DgiDB (Drug Gene Interaction Database)POLR3F
DoCM (Curated mutations)POLR3F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POLR3F (select a term)
intoGenPOLR3F
Cancer3DPOLR3F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOLR3F
Genetic Testing Registry POLR3F
NextProtQ9H1D9 [Medical]
TSGene10621
GENETestsPOLR3F
Huge Navigator POLR3F [HugePedia]
snp3D : Map Gene to Disease10621
BioCentury BCIQPOLR3F
ClinGenPOLR3F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10621
Chemical/Pharm GKB GenePA33520
Clinical trialPOLR3F
Miscellaneous
canSAR (ICR)POLR3F (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOLR3F
EVEXPOLR3F
GoPubMedPOLR3F
iHOPPOLR3F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:09 CET 2017

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