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POM121C (POM121 transmembrane nucleoporin C)

Identity

Alias_namesPOM121 membrane glycoprotein C
Other aliasPOM121-2
HGNC (Hugo) POM121C
LocusID (NCBI) 100101267
Atlas_Id 72065
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75416781 and ends at 75486288 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POM121C   34005
Cards
Entrez_Gene (NCBI)POM121C  100101267  POM121 transmembrane nucleoporin C
AliasesPOM121-2
GeneCards (Weizmann)POM121C
Ensembl hg19 (Hinxton)ENSG00000272391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272391 [Gene_View]  chr7:75416781-75486288 [Contig_View]  POM121C [Vega]
ICGC DataPortalENSG00000272391
TCGA cBioPortalPOM121C
AceView (NCBI)POM121C
Genatlas (Paris)POM121C
WikiGenes100101267
SOURCE (Princeton)POM121C
Genetics Home Reference (NIH)POM121C
Genomic and cartography
GoldenPath hg38 (UCSC)POM121C  -     chr7:75416781-75486288 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POM121C  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblPOM121C - 7q11.23 [CytoView hg19]  POM121C - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIPOM121C [Mapview hg19]  POM121C [Mapview hg38]
OMIM615754   
Gene and transcription
Genbank (Entrez)AB354586 AI039602 AK125865 AK127026 AK293305
RefSeq transcript (Entrez)NM_001099415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POM121C
Cluster EST : UnigeneHs.712563 [ NCBI ]
CGAP (NCI)Hs.712563
Alternative Splicing GalleryENSG00000272391
Gene ExpressionPOM121C [ NCBI-GEO ]   POM121C [ EBI - ARRAY_EXPRESS ]   POM121C [ SEEK ]   POM121C [ MEM ]
Gene Expression Viewer (FireBrowse)POM121C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100101267
GTEX Portal (Tissue expression)POM121C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8CG34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8CG34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8CG34
Splice isoforms : SwissVarA8CG34
PhosPhoSitePlusA8CG34
Domains : Interpro (EBI)Nucleoporin    POM121   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121C
DMDM Disease mutations100101267
Blocks (Seattle)POM121C
SuperfamilyA8CG34
Human Protein AtlasENSG00000272391
Peptide AtlasA8CG34
IPIIPI00946125   
Protein Interaction databases
DIP (DOE-UCLA)A8CG34
IntAct (EBI)A8CG34
FunCoupENSG00000272391
BioGRIDPOM121C
STRING (EMBL)POM121C
ZODIACPOM121C
Ontologies - Pathways
QuickGOA8CG34
Ontology : AmiGOnucleocytoplasmic transporter activity  protein binding  nuclear envelope  endoplasmic reticulum membrane  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear envelope disassembly  nuclear localization sequence binding  regulation of glucose transport  integral component of membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear pore central transport channel  nuclear pore nuclear basket  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBInucleocytoplasmic transporter activity  protein binding  nuclear envelope  endoplasmic reticulum membrane  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear envelope disassembly  nuclear localization sequence binding  regulation of glucose transport  integral component of membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear pore central transport channel  nuclear pore nuclear basket  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkPOM121C
Atlas of Cancer Signalling NetworkPOM121C
Wikipedia pathwaysPOM121C
Orthology - Evolution
OrthoDB100101267
GeneTree (enSembl)ENSG00000272391
Phylogenetic Trees/Animal Genes : TreeFamPOM121C
HOVERGENA8CG34
HOGENOMA8CG34
Homologs : HomoloGenePOM121C
Homology/Alignments : Family Browser (UCSC)POM121C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121C
dbVarPOM121C
ClinVarPOM121C
1000_GenomesPOM121C 
Exome Variant ServerPOM121C
ExAC (Exome Aggregation Consortium)POM121C (select the gene name)
Genetic variants : HAPMAP100101267
Genomic Variants (DGV)POM121C [DGVbeta]
DECIPHERPOM121C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOM121C 
Mutations
ICGC Data PortalPOM121C 
TCGA Data PortalPOM121C 
Broad Tumor PortalPOM121C
OASIS PortalPOM121C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOM121C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOM121C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121C
DgiDB (Drug Gene Interaction Database)POM121C
DoCM (Curated mutations)POM121C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121C (select a term)
intoGenPOM121C
Cancer3DPOM121C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615754   
Orphanet
MedgenPOM121C
Genetic Testing Registry POM121C
NextProtA8CG34 [Medical]
TSGene100101267
GENETestsPOM121C
Target ValidationPOM121C
Huge Navigator POM121C [HugePedia]
snp3D : Map Gene to Disease100101267
BioCentury BCIQPOM121C
ClinGenPOM121C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100101267
Chemical/Pharm GKB GenePA162399935
Clinical trialPOM121C
Miscellaneous
canSAR (ICR)POM121C (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121C
EVEXPOM121C
GoPubMedPOM121C
iHOPPOM121C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:52 CEST 2017

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