Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

POM121L12 (POM121 transmembrane nucleoporin like 12)

Identity

Alias_namesPOM121 membrane glycoprotein-like 12
POM121 transmembrane nucleoporin-like 12
Alias_symbol (synonym)DKFZp564N2472
Other alias-
HGNC (Hugo) POM121L12
LocusID (NCBI) 285877
Atlas_Id 72067
Location 7p12.1  [Link to chromosome band 7p12]
Location_base_pair Starts at 53035656 and ends at 53036925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCOR (Xp11.4) / POM121L12 (7p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POM121L12   25369
Cards
Entrez_Gene (NCBI)POM121L12  285877  POM121 transmembrane nucleoporin like 12
Aliases
GeneCards (Weizmann)POM121L12
Ensembl hg19 (Hinxton)ENSG00000221900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221900 [Gene_View]  chr7:53035656-53036925 [Contig_View]  POM121L12 [Vega]
ICGC DataPortalENSG00000221900
TCGA cBioPortalPOM121L12
AceView (NCBI)POM121L12
Genatlas (Paris)POM121L12
WikiGenes285877
SOURCE (Princeton)POM121L12
Genetics Home Reference (NIH)POM121L12
Genomic and cartography
GoldenPath hg38 (UCSC)POM121L12  -     chr7:53035656-53036925 +  7p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POM121L12  -     7p12.1   [Description]    (hg19-Feb_2009)
EnsemblPOM121L12 - 7p12.1 [CytoView hg19]  POM121L12 - 7p12.1 [CytoView hg38]
Mapping of homologs : NCBIPOM121L12 [Mapview hg19]  POM121L12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833888 BI826445 BX104052
RefSeq transcript (Entrez)NM_182595
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POM121L12
Cluster EST : UnigeneHs.381970 [ NCBI ]
CGAP (NCI)Hs.381970
Alternative Splicing GalleryENSG00000221900
Gene ExpressionPOM121L12 [ NCBI-GEO ]   POM121L12 [ EBI - ARRAY_EXPRESS ]   POM121L12 [ SEEK ]   POM121L12 [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285877
GTEX Portal (Tissue expression)POM121L12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7R1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7R1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7R1
Splice isoforms : SwissVarQ8N7R1
PhosPhoSitePlusQ8N7R1
Domains : Interpro (EBI)Nucleoporin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L12
DMDM Disease mutations285877
Blocks (Seattle)POM121L12
SuperfamilyQ8N7R1
Human Protein AtlasENSG00000221900
Peptide AtlasQ8N7R1
HPRD13212
IPIIPI00167277   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7R1
IntAct (EBI)Q8N7R1
FunCoupENSG00000221900
BioGRIDPOM121L12
STRING (EMBL)POM121L12
ZODIACPOM121L12
Ontologies - Pathways
QuickGOQ8N7R1
Ontology : AmiGOnucleocytoplasmic transporter activity  RNA export from nucleus  protein import into nucleus  nuclear localization sequence binding  structural constituent of nuclear pore  nuclear pore central transport channel  nuclear pore nuclear basket  
Ontology : EGO-EBInucleocytoplasmic transporter activity  RNA export from nucleus  protein import into nucleus  nuclear localization sequence binding  structural constituent of nuclear pore  nuclear pore central transport channel  nuclear pore nuclear basket  
NDEx NetworkPOM121L12
Atlas of Cancer Signalling NetworkPOM121L12
Wikipedia pathwaysPOM121L12
Orthology - Evolution
OrthoDB285877
GeneTree (enSembl)ENSG00000221900
Phylogenetic Trees/Animal Genes : TreeFamPOM121L12
HOVERGENQ8N7R1
HOGENOMQ8N7R1
Homologs : HomoloGenePOM121L12
Homology/Alignments : Family Browser (UCSC)POM121L12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L12
dbVarPOM121L12
ClinVarPOM121L12
1000_GenomesPOM121L12 
Exome Variant ServerPOM121L12
ExAC (Exome Aggregation Consortium)POM121L12 (select the gene name)
Genetic variants : HAPMAP285877
Genomic Variants (DGV)POM121L12 [DGVbeta]
DECIPHERPOM121L12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOM121L12 
Mutations
ICGC Data PortalPOM121L12 
TCGA Data PortalPOM121L12 
Broad Tumor PortalPOM121L12
OASIS PortalPOM121L12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOM121L12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOM121L12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121L12
DgiDB (Drug Gene Interaction Database)POM121L12
DoCM (Curated mutations)POM121L12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121L12 (select a term)
intoGenPOM121L12
Cancer3DPOM121L12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOM121L12
Genetic Testing Registry POM121L12
NextProtQ8N7R1 [Medical]
TSGene285877
GENETestsPOM121L12
Huge Navigator POM121L12 [HugePedia]
snp3D : Map Gene to Disease285877
BioCentury BCIQPOM121L12
ClinGenPOM121L12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285877
Chemical/Pharm GKB GenePA165618224
Clinical trialPOM121L12
Miscellaneous
canSAR (ICR)POM121L12 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121L12
EVEXPOM121L12
GoPubMedPOM121L12
iHOPPOM121L12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:49:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.