Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

POM121L1P (POM121 transmembrane nucleoporin like 1, pseudogene)

Identity

Alias_namesPOM121L1
POM121 membrane glycoprotein-like 1 (rat)
POM121 membrane glycoprotein-like 1, pseudogene
POM121 transmembrane nucleoporin-like 1, pseudogene
Other alias
HGNC (Hugo) POM121L1P
LocusID (NCBI) 25812
Atlas_Id 41785
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22974028 and ends at 22987012 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POM121L1P   16439
Cards
Entrez_Gene (NCBI)POM121L1P  25812  POM121 transmembrane nucleoporin like 1, pseudogene
AliasesPOM121L1
GeneCards (Weizmann)POM121L1P
Ensembl hg19 (Hinxton) [Gene_View]  chr22:22974028-22987012 [Contig_View]  POM121L1P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:22974028-22987012 [Contig_View]  POM121L1P [Vega]
TCGA cBioPortalPOM121L1P
AceView (NCBI)POM121L1P
Genatlas (Paris)POM121L1P
WikiGenes25812
SOURCE (Princeton)POM121L1P
Genetics Home Reference (NIH)POM121L1P
Genomic and cartography
GoldenPath hg19 (UCSC)POM121L1P  -     chr22:22974028-22987012 -  22q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POM121L1P  -     22q11.22   [Description]    (hg38-Dec_2013)
EnsemblPOM121L1P - 22q11.22 [CytoView hg19]  POM121L1P - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIPOM121L1P [Mapview hg19]  POM121L1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292412
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_000002 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)POM121L1P
Cluster EST : UnigeneHs.367764 [ NCBI ]
CGAP (NCI)Hs.367764
Gene ExpressionPOM121L1P [ NCBI-GEO ]   POM121L1P [ EBI - ARRAY_EXPRESS ]   POM121L1P [ SEEK ]   POM121L1P [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25812
GTEX Portal (Tissue expression)POM121L1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SYA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SYA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SYA9
Splice isoforms : SwissVarQ3SYA9
PhosPhoSitePlusQ3SYA9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L1P
DMDM Disease mutations25812
Blocks (Seattle)POM121L1P
SuperfamilyQ3SYA9
Peptide AtlasQ3SYA9
IPIIPI00514601   IPI00892536   
Protein Interaction databases
DIP (DOE-UCLA)Q3SYA9
IntAct (EBI)Q3SYA9
BioGRIDPOM121L1P
STRING (EMBL)POM121L1P
ZODIACPOM121L1P
Ontologies - Pathways
QuickGOQ3SYA9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPOM121L1P
Atlas of Cancer Signalling NetworkPOM121L1P
Wikipedia pathwaysPOM121L1P
Orthology - Evolution
OrthoDB25812
Phylogenetic Trees/Animal Genes : TreeFamPOM121L1P
HOVERGENQ3SYA9
HOGENOMQ3SYA9
Homologs : HomoloGenePOM121L1P
Homology/Alignments : Family Browser (UCSC)POM121L1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L1P
dbVarPOM121L1P
ClinVarPOM121L1P
1000_GenomesPOM121L1P 
Exome Variant ServerPOM121L1P
ExAC (Exome Aggregation Consortium)POM121L1P (select the gene name)
Genetic variants : HAPMAP25812
Genomic Variants (DGV)POM121L1P [DGVbeta]
DECIPHER (Syndromes)22:22974028-22987012  
CONAN: Copy Number AnalysisPOM121L1P 
Mutations
ICGC Data PortalPOM121L1P 
TCGA Data PortalPOM121L1P 
Broad Tumor PortalPOM121L1P
OASIS PortalPOM121L1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOM121L1P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121L1P
DgiDB (Drug Gene Interaction Database)POM121L1P
DoCM (Curated mutations)POM121L1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121L1P (select a term)
intoGenPOM121L1P
Cancer3DPOM121L1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOM121L1P
Genetic Testing Registry POM121L1P
NextProtQ3SYA9 [Medical]
TSGene25812
GENETestsPOM121L1P
Huge Navigator POM121L1P [HugePedia]
snp3D : Map Gene to Disease25812
BioCentury BCIQPOM121L1P
ClinGenPOM121L1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25812
Chemical/Pharm GKB GenePA38140
Clinical trialPOM121L1P
Miscellaneous
canSAR (ICR)POM121L1P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121L1P
EVEXPOM121L1P
GoPubMedPOM121L1P
iHOPPOM121L1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:22:13 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.