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POM121L2 (POM121 transmembrane nucleoporin like 2)

Identity

Alias_namesPOM121 membrane glycoprotein-like 2 (rat)
POM121 membrane glycoprotein-like 2
POM121 transmembrane nucleoporin-like 2
Alias_symbol (synonym)POM121-L
Other aliasPOM121L
HGNC (Hugo) POM121L2
LocusID (NCBI) 94026
Atlas_Id 72068
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27309063 and ends at 27312232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POM121L2   13973
Cards
Entrez_Gene (NCBI)POM121L2  94026  POM121 transmembrane nucleoporin like 2
AliasesPOM121-L; POM121L
GeneCards (Weizmann)POM121L2
Ensembl hg19 (Hinxton)ENSG00000158553 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158553 [Gene_View]  ENSG00000158553 [Sequence]  chr6:27309063-27312232 [Contig_View]  POM121L2 [Vega]
ICGC DataPortalENSG00000158553
TCGA cBioPortalPOM121L2
AceView (NCBI)POM121L2
Genatlas (Paris)POM121L2
WikiGenes94026
SOURCE (Princeton)POM121L2
Genetics Home Reference (NIH)POM121L2
Genomic and cartography
GoldenPath hg38 (UCSC)POM121L2  -     chr6:27309063-27312232 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POM121L2  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblPOM121L2 - 6p22.1 [CytoView hg19]  POM121L2 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIPOM121L2 [Mapview hg19]  POM121L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_033482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POM121L2
Cluster EST : UnigeneHs.729955 [ NCBI ]
CGAP (NCI)Hs.729955
Alternative Splicing GalleryENSG00000158553
Gene ExpressionPOM121L2 [ NCBI-GEO ]   POM121L2 [ EBI - ARRAY_EXPRESS ]   POM121L2 [ SEEK ]   POM121L2 [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94026
GTEX Portal (Tissue expression)POM121L2
Human Protein AtlasENSG00000158553-POM121L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KW2
Splice isoforms : SwissVarQ96KW2
PhosPhoSitePlusQ96KW2
Domains : Interpro (EBI)Nucleoporin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L2
DMDM Disease mutations94026
Blocks (Seattle)POM121L2
SuperfamilyQ96KW2
Human Protein Atlas [tissue]ENSG00000158553-POM121L2 [tissue]
Peptide AtlasQ96KW2
IPIIPI00307009   IPI00926042   
Protein Interaction databases
DIP (DOE-UCLA)Q96KW2
IntAct (EBI)Q96KW2
FunCoupENSG00000158553
BioGRIDPOM121L2
STRING (EMBL)POM121L2
ZODIACPOM121L2
Ontologies - Pathways
QuickGOQ96KW2
Ontology : AmiGOnucleocytoplasmic transporter activity  RNA export from nucleus  protein import into nucleus  nuclear localization sequence binding  structural constituent of nuclear pore  nuclear pore central transport channel  nuclear pore nuclear basket  
Ontology : EGO-EBInucleocytoplasmic transporter activity  RNA export from nucleus  protein import into nucleus  nuclear localization sequence binding  structural constituent of nuclear pore  nuclear pore central transport channel  nuclear pore nuclear basket  
NDEx NetworkPOM121L2
Atlas of Cancer Signalling NetworkPOM121L2
Wikipedia pathwaysPOM121L2
Orthology - Evolution
OrthoDB94026
GeneTree (enSembl)ENSG00000158553
Phylogenetic Trees/Animal Genes : TreeFamPOM121L2
HOVERGENQ96KW2
HOGENOMQ96KW2
Homologs : HomoloGenePOM121L2
Homology/Alignments : Family Browser (UCSC)POM121L2
Gene fusions - Rearrangements
Fusion : QuiverPOM121L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L2
dbVarPOM121L2
ClinVarPOM121L2
1000_GenomesPOM121L2 
Exome Variant ServerPOM121L2
ExAC (Exome Aggregation Consortium)ENSG00000158553
GNOMAD BrowserENSG00000158553
Varsome BrowserPOM121L2
Genetic variants : HAPMAP94026
Genomic Variants (DGV)POM121L2 [DGVbeta]
DECIPHERPOM121L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOM121L2 
Mutations
ICGC Data PortalPOM121L2 
TCGA Data PortalPOM121L2 
Broad Tumor PortalPOM121L2
OASIS PortalPOM121L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOM121L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOM121L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121L2
DgiDB (Drug Gene Interaction Database)POM121L2
DoCM (Curated mutations)POM121L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121L2 (select a term)
intoGenPOM121L2
Cancer3DPOM121L2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPOM121L2
MedgenPOM121L2
Genetic Testing Registry POM121L2
NextProtQ96KW2 [Medical]
TSGene94026
GENETestsPOM121L2
Target ValidationPOM121L2
Huge Navigator POM121L2 [HugePedia]
snp3D : Map Gene to Disease94026
BioCentury BCIQPOM121L2
ClinGenPOM121L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94026
Chemical/Pharm GKB GenePA33524
Clinical trialPOM121L2
Miscellaneous
canSAR (ICR)POM121L2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121L2
EVEXPOM121L2
GoPubMedPOM121L2
iHOPPOM121L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:24:32 CEST 2018

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