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POM121L4P (POM121 transmembrane nucleoporin like 4, pseudogene)

Identity

Alias (NCBI)-
HGNC (Hugo) POM121L4P
HGNC Previous namePOM121 membrane glycoprotein-like 4 pseudogene (rat)
 POM121 membrane glycoprotein-like 4 pseudogene
 POM121 transmembrane nucleoporin-like 4 pseudogene
LocusID (NCBI) 266697
Atlas_Id 54548
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20689555 and ends at 20691721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
POM121L4P (22q11.21) / LCMT1 (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)POM121L4P   19326
Cards
Entrez_Gene (NCBI)POM121L4P    POM121 transmembrane nucleoporin like 4, pseudogene
Aliases
GeneCards (Weizmann)POM121L4P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr22:20689555-20691721 [Contig_View]  POM121L4P [Vega]
TCGA cBioPortalPOM121L4P
AceView (NCBI)POM121L4P
Genatlas (Paris)POM121L4P
SOURCE (Princeton)POM121L4P
Genetics Home Reference (NIH)POM121L4P
Genomic and cartography
GoldenPath hg38 (UCSC)POM121L4P  -     chr22:20689555-20691721 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POM121L4P  -     22q11.21   [Description]    (hg19-Feb_2009)
GoldenPathPOM121L4P - 22q11.21 [CytoView hg19]  POM121L4P - 22q11.21 [CytoView hg38]
Genome Data Viewer NCBIPOM121L4P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC103891
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)POM121L4P
Gene ExpressionPOM121L4P [ NCBI-GEO ]   POM121L4P [ EBI - ARRAY_EXPRESS ]   POM121L4P [ SEEK ]   POM121L4P [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L4P [ Firebrowse - Broad ]
GenevisibleExpression of POM121L4P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266697
GTEX Portal (Tissue expression)POM121L4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SYA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SYA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SYA9
PhosPhoSitePlusQ3SYA9
Domains : Interpro (EBI)POM121-like_prot_1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L4P
SuperfamilyQ3SYA9
AlphaFold pdb e-kbQ3SYA9   
Protein Interaction databases
DIP (DOE-UCLA)Q3SYA9
IntAct (EBI)Q3SYA9
BioGRIDPOM121L4P
STRING (EMBL)POM121L4P
ZODIACPOM121L4P
Ontologies - Pathways
QuickGOQ3SYA9
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkPOM121L4P
Atlas of Cancer Signalling NetworkPOM121L4P
Wikipedia pathwaysPOM121L4P
Orthology - Evolution
OrthoDB266697
Phylogenetic Trees/Animal Genes : TreeFamPOM121L4P
Homologs : HomoloGenePOM121L4P
Homology/Alignments : Family Browser (UCSC)POM121L4P
Gene fusions - Rearrangements
Fusion : MitelmanPOM121L4P/LCMT1 [22q11.21/16p12.1]  
Fusion : QuiverPOM121L4P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L4P
dbVarPOM121L4P
ClinVarPOM121L4P
MonarchPOM121L4P
1000_GenomesPOM121L4P 
Exome Variant ServerPOM121L4P
Varsome BrowserPOM121L4P
ACMGPOM121L4P variants
VarityQ3SYA9
Genomic Variants (DGV)POM121L4P [DGVbeta]
DECIPHERPOM121L4P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOM121L4P 
Mutations
ICGC Data PortalPOM121L4P 
TCGA Data PortalPOM121L4P 
Broad Tumor PortalPOM121L4P
OASIS PortalPOM121L4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOM121L4P
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPOM121L4P
DgiDB (Drug Gene Interaction Database)POM121L4P
DoCM (Curated mutations)POM121L4P
CIViC (Clinical Interpretations of Variants in Cancer)POM121L4P
Cancer3DPOM121L4P
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPOM121L4P
MedgenPOM121L4P
Genetic Testing Registry POM121L4P
NextProtQ3SYA9 [Medical]
GENETestsPOM121L4P
Target ValidationPOM121L4P
Huge Navigator POM121L4P [HugePedia]
ClinGenPOM121L4P
Clinical trials, drugs, therapy
MyCancerGenomePOM121L4P
Protein Interactions : CTDPOM121L4P
Pharm GKB GenePA134919038
PharosQ3SYA9
Clinical trialPOM121L4P
Miscellaneous
canSAR (ICR)POM121L4P
HarmonizomePOM121L4P
DataMed IndexPOM121L4P
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPOM121L4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:26:09 CEST 2021

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