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POM121L4P (POM121 transmembrane nucleoporin like 4, pseudogene)

Identity

Alias_namesPOM121 membrane glycoprotein-like 4 pseudogene (rat)
POM121 membrane glycoprotein-like 4 pseudogene
POM121 transmembrane nucleoporin-like 4 pseudogene
Other alias-
HGNC (Hugo) POM121L4P
LocusID (NCBI) 266697
Atlas_Id 54548
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21043843 and ends at 21046009 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
POM121L4P (22q11.21) / LCMT1 (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)POM121L4P   19326
Cards
Entrez_Gene (NCBI)POM121L4P  266697  POM121 transmembrane nucleoporin like 4, pseudogene
Aliases
GeneCards (Weizmann)POM121L4P
Ensembl hg19 (Hinxton) [Gene_View]  chr22:21043843-21046009 [Contig_View]  POM121L4P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:21043843-21046009 [Contig_View]  POM121L4P [Vega]
TCGA cBioPortalPOM121L4P
AceView (NCBI)POM121L4P
Genatlas (Paris)POM121L4P
WikiGenes266697
SOURCE (Princeton)POM121L4P
Genetics Home Reference (NIH)POM121L4P
Genomic and cartography
GoldenPath hg19 (UCSC)POM121L4P  -     chr22:21043843-21046009 +  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POM121L4P  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblPOM121L4P - 22q11.21 [CytoView hg19]  POM121L4P - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIPOM121L4P [Mapview hg19]  POM121L4P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC103891
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_002374 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)POM121L4P
Cluster EST : UnigeneHs.558711 [ NCBI ]
CGAP (NCI)Hs.558711
Gene ExpressionPOM121L4P [ NCBI-GEO ]   POM121L4P [ EBI - ARRAY_EXPRESS ]   POM121L4P [ SEEK ]   POM121L4P [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266697
GTEX Portal (Tissue expression)POM121L4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SYA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SYA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SYA9
Splice isoforms : SwissVarQ3SYA9
PhosPhoSitePlusQ3SYA9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L4P
DMDM Disease mutations266697
Blocks (Seattle)POM121L4P
SuperfamilyQ3SYA9
Peptide AtlasQ3SYA9
IPIIPI00847571   
Protein Interaction databases
DIP (DOE-UCLA)Q3SYA9
IntAct (EBI)Q3SYA9
BioGRIDPOM121L4P
STRING (EMBL)POM121L4P
ZODIACPOM121L4P
Ontologies - Pathways
QuickGOQ3SYA9
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkPOM121L4P
Atlas of Cancer Signalling NetworkPOM121L4P
Wikipedia pathwaysPOM121L4P
Orthology - Evolution
OrthoDB266697
Phylogenetic Trees/Animal Genes : TreeFamPOM121L4P
HOVERGENQ3SYA9
HOGENOMQ3SYA9
Homologs : HomoloGenePOM121L4P
Homology/Alignments : Family Browser (UCSC)POM121L4P
Gene fusions - Rearrangements
Fusion : MitelmanPOM121L4P/LCMT1 [22q11.21/16p12.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L4P
dbVarPOM121L4P
ClinVarPOM121L4P
1000_GenomesPOM121L4P 
Exome Variant ServerPOM121L4P
ExAC (Exome Aggregation Consortium)POM121L4P (select the gene name)
Genetic variants : HAPMAP266697
Genomic Variants (DGV)POM121L4P [DGVbeta]
DECIPHER (Syndromes)22:21043843-21046009  
CONAN: Copy Number AnalysisPOM121L4P 
Mutations
ICGC Data PortalPOM121L4P 
TCGA Data PortalPOM121L4P 
Broad Tumor PortalPOM121L4P
OASIS PortalPOM121L4P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOM121L4P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOM121L4P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121L4P
DgiDB (Drug Gene Interaction Database)POM121L4P
DoCM (Curated mutations)POM121L4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121L4P (select a term)
intoGenPOM121L4P
Cancer3DPOM121L4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOM121L4P
Genetic Testing Registry POM121L4P
NextProtQ3SYA9 [Medical]
TSGene266697
GENETestsPOM121L4P
Huge Navigator POM121L4P [HugePedia]
snp3D : Map Gene to Disease266697
BioCentury BCIQPOM121L4P
ClinGenPOM121L4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD266697
Chemical/Pharm GKB GenePA134919038
Clinical trialPOM121L4P
Miscellaneous
canSAR (ICR)POM121L4P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121L4P
EVEXPOM121L4P
GoPubMedPOM121L4P
iHOPPOM121L4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:04 CEST 2017

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