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POM121L8P (POM121 transmembrane nucleoporin-like 8 pseudogene)

Identity

Alias_namesPOM121 membrane glycoprotein-like 8 pseudogene
POM121 transmembrane nucleoporin-like 8 pseudogene
Other aliasDKFZp434K191
HGNC (Hugo) POM121L8P
LocusID (NCBI) 29797
Atlas_Id 72069
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21645342 and ends at 21648982 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POM121L8P   35446
Cards
Entrez_Gene (NCBI)POM121L8P  29797  POM121 transmembrane nucleoporin-like 8 pseudogene
AliasesDKFZp434K191
GeneCards (Weizmann)POM121L8P
Ensembl hg19 (Hinxton) [Gene_View]  chr22:21645342-21648982 [Contig_View]  POM121L8P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:21645342-21648982 [Contig_View]  POM121L8P [Vega]
TCGA cBioPortalPOM121L8P
AceView (NCBI)POM121L8P
Genatlas (Paris)POM121L8P
WikiGenes29797
SOURCE (Princeton)POM121L8P
Genetics Home Reference (NIH)POM121L8P
Genomic and cartography
GoldenPath hg19 (UCSC)POM121L8P  -     chr22:21645342-21648982 +  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POM121L8P  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblPOM121L8P - 22q11.21 [CytoView hg19]  POM121L8P - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIPOM121L8P [Mapview hg19]  POM121L8P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292222 AK302597 AK302811 AK308294 AK308336
RefSeq transcript (Entrez)NM_001029950
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)POM121L8P
Cluster EST : UnigeneHs.745076 [ NCBI ]
CGAP (NCI)Hs.745076
Gene ExpressionPOM121L8P [ NCBI-GEO ]   POM121L8P [ EBI - ARRAY_EXPRESS ]   POM121L8P [ SEEK ]   POM121L8P [ MEM ]
Gene Expression Viewer (FireBrowse)POM121L8P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29797
GTEX Portal (Tissue expression)POM121L8P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKY6
Splice isoforms : SwissVarQ5BKY6
PhosPhoSitePlusQ5BKY6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)POM121L8P
DMDM Disease mutations29797
Blocks (Seattle)POM121L8P
SuperfamilyQ5BKY6
Peptide AtlasQ5BKY6
HPRD18779
IPIIPI00479696   IPI00975482   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKY6
IntAct (EBI)Q5BKY6
BioGRIDPOM121L8P
STRING (EMBL)POM121L8P
ZODIACPOM121L8P
Ontologies - Pathways
QuickGOQ5BKY6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPOM121L8P
Atlas of Cancer Signalling NetworkPOM121L8P
Wikipedia pathwaysPOM121L8P
Orthology - Evolution
OrthoDB29797
Phylogenetic Trees/Animal Genes : TreeFamPOM121L8P
HOVERGENQ5BKY6
HOGENOMQ5BKY6
Homologs : HomoloGenePOM121L8P
Homology/Alignments : Family Browser (UCSC)POM121L8P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOM121L8P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POM121L8P
dbVarPOM121L8P
ClinVarPOM121L8P
1000_GenomesPOM121L8P 
Exome Variant ServerPOM121L8P
ExAC (Exome Aggregation Consortium)POM121L8P (select the gene name)
Genetic variants : HAPMAP29797
Genomic Variants (DGV)POM121L8P [DGVbeta]
DECIPHER (Syndromes)22:21645342-21648982  
CONAN: Copy Number AnalysisPOM121L8P 
Mutations
ICGC Data PortalPOM121L8P 
TCGA Data PortalPOM121L8P 
Broad Tumor PortalPOM121L8P
OASIS PortalPOM121L8P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOM121L8P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POM121L8P
DgiDB (Drug Gene Interaction Database)POM121L8P
DoCM (Curated mutations)POM121L8P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POM121L8P (select a term)
intoGenPOM121L8P
Cancer3DPOM121L8P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOM121L8P
Genetic Testing Registry POM121L8P
NextProtQ5BKY6 [Medical]
TSGene29797
GENETestsPOM121L8P
Huge Navigator POM121L8P [HugePedia]
snp3D : Map Gene to Disease29797
BioCentury BCIQPOM121L8P
ClinGenPOM121L8P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29797
Clinical trialPOM121L8P
Miscellaneous
canSAR (ICR)POM121L8P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOM121L8P
EVEXPOM121L8P
GoPubMedPOM121L8P
iHOPPOM121L8P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:11 CET 2017

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