Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-))

Identity

Alias_namesC3orf39
GTDC2
chromosome 3 open reading frame 39
glycosyltransferase-like domain containing 2
Alias_symbol (synonym)FLJ14566
AGO61
Other aliasMDDGA8
HGNC (Hugo) POMGNT2
LocusID (NCBI) 84892
Atlas_Id 72071
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 43079229 and ends at 43106083 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KRBOX1 (3p22.1) / POMGNT2 (3p22.1)POMGNT2 (3p22.1) / CHFR (12q24.33)POMGNT2 (3p22.1) / RMND5A (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POMGNT2   25902
Cards
Entrez_Gene (NCBI)POMGNT2  84892  protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
AliasesAGO61; C3orf39; GTDC2; MDDGA8
GeneCards (Weizmann)POMGNT2
Ensembl hg19 (Hinxton)ENSG00000144647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144647 [Gene_View]  chr3:43079229-43106083 [Contig_View]  POMGNT2 [Vega]
ICGC DataPortalENSG00000144647
TCGA cBioPortalPOMGNT2
AceView (NCBI)POMGNT2
Genatlas (Paris)POMGNT2
WikiGenes84892
SOURCE (Princeton)POMGNT2
Genetics Home Reference (NIH)POMGNT2
Genomic and cartography
GoldenPath hg38 (UCSC)POMGNT2  -     chr3:43079229-43106083 -  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POMGNT2  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblPOMGNT2 - 3p22.1 [CytoView hg19]  POMGNT2 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIPOMGNT2 [Mapview hg19]  POMGNT2 [Mapview hg38]
OMIM614828   614830   
Gene and transcription
Genbank (Entrez)AK027472 AK092147 AK124737 BC004508 BC021220
RefSeq transcript (Entrez)NM_032806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POMGNT2
Cluster EST : UnigeneHs.745002 [ NCBI ]
CGAP (NCI)Hs.745002
Alternative Splicing GalleryENSG00000144647
Gene ExpressionPOMGNT2 [ NCBI-GEO ]   POMGNT2 [ EBI - ARRAY_EXPRESS ]   POMGNT2 [ SEEK ]   POMGNT2 [ MEM ]
Gene Expression Viewer (FireBrowse)POMGNT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84892
GTEX Portal (Tissue expression)POMGNT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAT1
Splice isoforms : SwissVarQ8NAT1
PhosPhoSitePlusQ8NAT1
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Glycosyltransferase_61    Ig-like_fold   
Domain families : Pfam (Sanger)DUF563 (PF04577)   
Domain families : Pfam (NCBI)pfam04577   
Conserved Domain (NCBI)POMGNT2
DMDM Disease mutations84892
Blocks (Seattle)POMGNT2
SuperfamilyQ8NAT1
Human Protein AtlasENSG00000144647
Peptide AtlasQ8NAT1
HPRD07863
IPIIPI00171385   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAT1
IntAct (EBI)Q8NAT1
FunCoupENSG00000144647
BioGRIDPOMGNT2
STRING (EMBL)POMGNT2
ZODIACPOMGNT2
Ontologies - Pathways
QuickGOQ8NAT1
Ontology : AmiGOneuron migration  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein O-linked glycosylation  protein O-linked glycosylation  acetylglucosaminyltransferase activity  acetylglucosaminyltransferase activity  integral component of membrane  protein O-linked mannosylation  protein O-GlcNAc transferase activity  
Ontology : EGO-EBIneuron migration  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein O-linked glycosylation  protein O-linked glycosylation  acetylglucosaminyltransferase activity  acetylglucosaminyltransferase activity  integral component of membrane  protein O-linked mannosylation  protein O-GlcNAc transferase activity  
NDEx NetworkPOMGNT2
Atlas of Cancer Signalling NetworkPOMGNT2
Wikipedia pathwaysPOMGNT2
Orthology - Evolution
OrthoDB84892
GeneTree (enSembl)ENSG00000144647
Phylogenetic Trees/Animal Genes : TreeFamPOMGNT2
HOVERGENQ8NAT1
HOGENOMQ8NAT1
Homologs : HomoloGenePOMGNT2
Homology/Alignments : Family Browser (UCSC)POMGNT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOMGNT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POMGNT2
dbVarPOMGNT2
ClinVarPOMGNT2
1000_GenomesPOMGNT2 
Exome Variant ServerPOMGNT2
ExAC (Exome Aggregation Consortium)POMGNT2 (select the gene name)
Genetic variants : HAPMAP84892
Genomic Variants (DGV)POMGNT2 [DGVbeta]
DECIPHERPOMGNT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOMGNT2 
Mutations
ICGC Data PortalPOMGNT2 
TCGA Data PortalPOMGNT2 
Broad Tumor PortalPOMGNT2
OASIS PortalPOMGNT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOMGNT2
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POMGNT2
DgiDB (Drug Gene Interaction Database)POMGNT2
DoCM (Curated mutations)POMGNT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POMGNT2 (select a term)
intoGenPOMGNT2
Cancer3DPOMGNT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614828    614830   
Orphanet8725   
MedgenPOMGNT2
Genetic Testing Registry POMGNT2
NextProtQ8NAT1 [Medical]
TSGene84892
GENETestsPOMGNT2
Target ValidationPOMGNT2
Huge Navigator POMGNT2 [HugePedia]
snp3D : Map Gene to Disease84892
BioCentury BCIQPOMGNT2
ClinGenPOMGNT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84892
Chemical/Pharm GKB GenePA142672374
Clinical trialPOMGNT2
Miscellaneous
canSAR (ICR)POMGNT2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOMGNT2
EVEXPOMGNT2
GoPubMedPOMGNT2
iHOPPOMGNT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:36:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.