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POMK (protein-O-mannose kinase)

Identity

Alias_symbol (synonym)FLJ23356
SgK196
Other aliasMDDGA12
MDDGC12
SGK196
HGNC (Hugo) POMK
LocusID (NCBI) 84197
Atlas_Id 72072
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 43093506 and ends at 43123180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POMK (8p11.21) / KMT2B (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POMK   26267
Cards
Entrez_Gene (NCBI)POMK  84197  protein-O-mannose kinase
AliasesMDDGA12; MDDGC12; SGK196
GeneCards (Weizmann)POMK
Ensembl hg19 (Hinxton)ENSG00000185900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185900 [Gene_View]  chr8:43093506-43123180 [Contig_View]  POMK [Vega]
ICGC DataPortalENSG00000185900
TCGA cBioPortalPOMK
AceView (NCBI)POMK
Genatlas (Paris)POMK
WikiGenes84197
SOURCE (Princeton)POMK
Genetics Home Reference (NIH)POMK
Genomic and cartography
GoldenPath hg38 (UCSC)POMK  -     chr8:43093506-43123180 +  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POMK  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblPOMK - 8p11.21 [CytoView hg19]  POMK - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIPOMK [Mapview hg19]  POMK [Mapview hg38]
OMIM615247   615249   616094   
Gene and transcription
Genbank (Entrez)BC101548 BC113703 BQ365114 DA074115 DA330953
RefSeq transcript (Entrez)NM_001277971 NM_032237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POMK
Cluster EST : UnigeneHs.491646 [ NCBI ]
CGAP (NCI)Hs.491646
Alternative Splicing GalleryENSG00000185900
Gene ExpressionPOMK [ NCBI-GEO ]   POMK [ EBI - ARRAY_EXPRESS ]   POMK [ SEEK ]   POMK [ MEM ]
Gene Expression Viewer (FireBrowse)POMK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84197
GTEX Portal (Tissue expression)POMK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5K3
Splice isoforms : SwissVarQ9H5K3
Catalytic activity : Enzyme2.7.1.183 [ Enzyme-Expasy ]   2.7.1.1832.7.1.183 [ IntEnz-EBI ]   2.7.1.183 [ BRENDA ]   2.7.1.183 [ KEGG ]   
PhosPhoSitePlusQ9H5K3
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Ser-Thr/Tyr_kinase_cat_dom   
Domain families : Pfam (Sanger)Pkinase_Tyr (PF07714)   
Domain families : Pfam (NCBI)pfam07714   
Conserved Domain (NCBI)POMK
DMDM Disease mutations84197
Blocks (Seattle)POMK
SuperfamilyQ9H5K3
Human Protein AtlasENSG00000185900
Peptide AtlasQ9H5K3
HPRD08668
IPIIPI00031005   IPI00976791   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5K3
IntAct (EBI)Q9H5K3
FunCoupENSG00000185900
BioGRIDPOMK
STRING (EMBL)POMK
ZODIACPOMK
Ontologies - Pathways
QuickGOQ9H5K3
Ontology : AmiGOneuron migration  protein kinase activity  ATP binding  endoplasmic reticulum membrane  protein phosphorylation  protein O-linked glycosylation  protein O-linked glycosylation  brain development  learning or memory  integral component of membrane  phosphotransferase activity, alcohol group as acceptor  carbohydrate kinase activity  sensory perception of pain  carbohydrate phosphorylation  neuromuscular process  
Ontology : EGO-EBIneuron migration  protein kinase activity  ATP binding  endoplasmic reticulum membrane  protein phosphorylation  protein O-linked glycosylation  protein O-linked glycosylation  brain development  learning or memory  integral component of membrane  phosphotransferase activity, alcohol group as acceptor  carbohydrate kinase activity  sensory perception of pain  carbohydrate phosphorylation  neuromuscular process  
NDEx NetworkPOMK
Atlas of Cancer Signalling NetworkPOMK
Wikipedia pathwaysPOMK
Orthology - Evolution
OrthoDB84197
GeneTree (enSembl)ENSG00000185900
Phylogenetic Trees/Animal Genes : TreeFamPOMK
HOVERGENQ9H5K3
HOGENOMQ9H5K3
Homologs : HomoloGenePOMK
Homology/Alignments : Family Browser (UCSC)POMK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOMK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POMK
dbVarPOMK
ClinVarPOMK
1000_GenomesPOMK 
Exome Variant ServerPOMK
ExAC (Exome Aggregation Consortium)POMK (select the gene name)
Genetic variants : HAPMAP84197
Genomic Variants (DGV)POMK [DGVbeta]
DECIPHERPOMK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOMK 
Mutations
ICGC Data PortalPOMK 
TCGA Data PortalPOMK 
Broad Tumor PortalPOMK
OASIS PortalPOMK [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOMK
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POMK
DgiDB (Drug Gene Interaction Database)POMK
DoCM (Curated mutations)POMK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POMK (select a term)
intoGenPOMK
Cancer3DPOMK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615247    615249    616094   
Orphanet22509    23519    8725   
MedgenPOMK
Genetic Testing Registry POMK
NextProtQ9H5K3 [Medical]
TSGene84197
GENETestsPOMK
Target ValidationPOMK
Huge Navigator POMK [HugePedia]
snp3D : Map Gene to Disease84197
BioCentury BCIQPOMK
ClinGenPOMK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84197
Chemical/Pharm GKB GenePA166123723
Clinical trialPOMK
Miscellaneous
canSAR (ICR)POMK (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOMK
EVEXPOMK
GoPubMedPOMK
iHOPPOMK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:57 CEST 2017

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