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POMP (proteasome maturation protein)

Identity

Alias_namesC13orf12
chromosome 13 open reading frame 12
Alias_symbol (synonym)HSPC014
UMP1
Other aliasPNAS-110
HGNC (Hugo) POMP
LocusID (NCBI) 51371
Atlas_Id 54050
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 29233141 and ends at 29253093 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIFC2 (8q24.3) / POMP (13q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POMP   20330
Cards
Entrez_Gene (NCBI)POMP  51371  proteasome maturation protein
AliasesC13orf12; HSPC014; PNAS-110; UMP1
GeneCards (Weizmann)POMP
Ensembl hg19 (Hinxton)ENSG00000132963 [Gene_View]  chr13:29233141-29253093 [Contig_View]  POMP [Vega]
Ensembl hg38 (Hinxton)ENSG00000132963 [Gene_View]  chr13:29233141-29253093 [Contig_View]  POMP [Vega]
ICGC DataPortalENSG00000132963
TCGA cBioPortalPOMP
AceView (NCBI)POMP
Genatlas (Paris)POMP
WikiGenes51371
SOURCE (Princeton)POMP
Genetics Home Reference (NIH)POMP
Genomic and cartography
GoldenPath hg19 (UCSC)POMP  -     chr13:29233141-29253093 +  13q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POMP  -     13q12.3   [Description]    (hg38-Dec_2013)
EnsemblPOMP - 13q12.3 [CytoView hg19]  POMP - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIPOMP [Mapview hg19]  POMP [Mapview hg38]
OMIM601952   613386   
Gene and transcription
Genbank (Entrez)AF077200 AF125097 AF262975 AF275807 AK312118
RefSeq transcript (Entrez)NM_015932
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_027550 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)POMP
Cluster EST : UnigeneHs.268742 [ NCBI ]
CGAP (NCI)Hs.268742
Alternative Splicing GalleryENSG00000132963
Gene ExpressionPOMP [ NCBI-GEO ]   POMP [ EBI - ARRAY_EXPRESS ]   POMP [ SEEK ]   POMP [ MEM ]
Gene Expression Viewer (FireBrowse)POMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51371
GTEX Portal (Tissue expression)POMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y244   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y244  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y244
Splice isoforms : SwissVarQ9Y244
PhosPhoSitePlusQ9Y244
Domains : Interpro (EBI)UMP1   
Domain families : Pfam (Sanger)UMP1 (PF05348)   
Domain families : Pfam (NCBI)pfam05348   
Conserved Domain (NCBI)POMP
DMDM Disease mutations51371
Blocks (Seattle)POMP
SuperfamilyQ9Y244
Human Protein AtlasENSG00000132963
Peptide AtlasQ9Y244
HPRD12613
IPIIPI00006377   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y244
IntAct (EBI)Q9Y244
FunCoupENSG00000132963
BioGRIDPOMP
STRING (EMBL)POMP
ZODIACPOMP
Ontologies - Pathways
QuickGOQ9Y244
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  endoplasmic reticulum  cytosol  organelle membrane  proteasome assembly  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  endoplasmic reticulum  cytosol  organelle membrane  proteasome assembly  
Pathways : KEGGProteasome   
NDEx NetworkPOMP
Atlas of Cancer Signalling NetworkPOMP
Wikipedia pathwaysPOMP
Orthology - Evolution
OrthoDB51371
GeneTree (enSembl)ENSG00000132963
Phylogenetic Trees/Animal Genes : TreeFamPOMP
HOVERGENQ9Y244
HOGENOMQ9Y244
Homologs : HomoloGenePOMP
Homology/Alignments : Family Browser (UCSC)POMP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POMP
dbVarPOMP
ClinVarPOMP
1000_GenomesPOMP 
Exome Variant ServerPOMP
ExAC (Exome Aggregation Consortium)POMP (select the gene name)
Genetic variants : HAPMAP51371
Genomic Variants (DGV)POMP [DGVbeta]
DECIPHER (Syndromes)13:29233141-29253093  ENSG00000132963
CONAN: Copy Number AnalysisPOMP 
Mutations
ICGC Data PortalPOMP 
TCGA Data PortalPOMP 
Broad Tumor PortalPOMP
OASIS PortalPOMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch POMP
DgiDB (Drug Gene Interaction Database)POMP
DoCM (Curated mutations)POMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POMP (select a term)
intoGenPOMP
Cancer3DPOMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601952    613386   
Orphanet20533   
MedgenPOMP
Genetic Testing Registry POMP
NextProtQ9Y244 [Medical]
TSGene51371
GENETestsPOMP
Huge Navigator POMP [HugePedia]
snp3D : Map Gene to Disease51371
BioCentury BCIQPOMP
ClinGenPOMP (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51371
Chemical/Pharm GKB GenePA134898606
Clinical trialPOMP
Miscellaneous
canSAR (ICR)POMP (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOMP
EVEXPOMP
GoPubMedPOMP
iHOPPOMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:22:14 CET 2017

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