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POMZP3 (POM121 and ZP3 fusion)

Identity

Alias_namesPOM (POM121 rat homolog) and ZP3 fusion
POM (POM121 homolog, rat) and ZP3 fusion
Alias_symbol (synonym)POM-ZP3
POM121
Other alias
HGNC (Hugo) POMZP3
LocusID (NCBI) 22932
Atlas_Id 56188
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76609986 and ends at 76627303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BAZ1B (7q11.23) / POMZP3 (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  BAZ1B/POMZP3 (7q11)


External links

Nomenclature
HGNC (Hugo)POMZP3   9203
Cards
Entrez_Gene (NCBI)POMZP3  22932  POM121 and ZP3 fusion
AliasesPOM-ZP3; POM121
GeneCards (Weizmann)POMZP3
Ensembl hg19 (Hinxton)ENSG00000146707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146707 [Gene_View]  ENSG00000146707 [Sequence]  chr7:76609986-76627303 [Contig_View]  POMZP3 [Vega]
ICGC DataPortalENSG00000146707
TCGA cBioPortalPOMZP3
AceView (NCBI)POMZP3
Genatlas (Paris)POMZP3
WikiGenes22932
SOURCE (Princeton)POMZP3
Genetics Home Reference (NIH)POMZP3
Genomic and cartography
GoldenPath hg38 (UCSC)POMZP3  -     chr7:76609986-76627303 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POMZP3  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblPOMZP3 - 7q11.23 [CytoView hg19]  POMZP3 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIPOMZP3 [Mapview hg19]  POMZP3 [Mapview hg38]
OMIM600587   
Gene and transcription
Genbank (Entrez)BC000487 BC017101 BC144677 BG461659 BI084456
RefSeq transcript (Entrez)NM_012230 NM_152992
RefSeq genomic (Entrez)NC_000007 NT_187561
Consensus coding sequences : CCDS (NCBI)POMZP3
Cluster EST : UnigeneHs.488877 [ NCBI ]
CGAP (NCI)Hs.488877
Alternative Splicing GalleryENSG00000146707
Gene ExpressionPOMZP3 [ NCBI-GEO ]   POMZP3 [ EBI - ARRAY_EXPRESS ]   POMZP3 [ SEEK ]   POMZP3 [ MEM ]
Gene Expression Viewer (FireBrowse)POMZP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22932
GTEX Portal (Tissue expression)POMZP3
Human Protein AtlasENSG00000146707-POMZP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJE2
Splice isoforms : SwissVarQ6PJE2
PhosPhoSitePlusQ6PJE2
Domains : Interpro (EBI)ZP_dom   
Domain families : Pfam (Sanger)Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam00100   
Conserved Domain (NCBI)POMZP3
DMDM Disease mutations22932
Blocks (Seattle)POMZP3
SuperfamilyQ6PJE2
Human Protein Atlas [tissue]ENSG00000146707-POMZP3 [tissue]
Peptide AtlasQ6PJE2
HPRD15974
IPIIPI00455992   IPI00171249   IPI00924937   IPI00924772   IPI00924529   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJE2
IntAct (EBI)Q6PJE2
FunCoupENSG00000146707
BioGRIDPOMZP3
STRING (EMBL)POMZP3
ZODIACPOMZP3
Ontologies - Pathways
QuickGOQ6PJE2
Ontology : AmiGOmolecular_function  cellular_component  nucleoplasm  binding of sperm to zona pellucida  biological_process  extracellular matrix  nuclear membrane  acrosin binding  egg coat formation  positive regulation of acrosome reaction  
Ontology : EGO-EBImolecular_function  cellular_component  nucleoplasm  binding of sperm to zona pellucida  biological_process  extracellular matrix  nuclear membrane  acrosin binding  egg coat formation  positive regulation of acrosome reaction  
NDEx NetworkPOMZP3
Atlas of Cancer Signalling NetworkPOMZP3
Wikipedia pathwaysPOMZP3
Orthology - Evolution
OrthoDB22932
GeneTree (enSembl)ENSG00000146707
Phylogenetic Trees/Animal Genes : TreeFamPOMZP3
HOVERGENQ6PJE2
HOGENOMQ6PJE2
Homologs : HomoloGenePOMZP3
Homology/Alignments : Family Browser (UCSC)POMZP3
Gene fusions - Rearrangements
Fusion : QuiverPOMZP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOMZP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POMZP3
dbVarPOMZP3
ClinVarPOMZP3
1000_GenomesPOMZP3 
Exome Variant ServerPOMZP3
ExAC (Exome Aggregation Consortium)ENSG00000146707
GNOMAD BrowserENSG00000146707
Varsome BrowserPOMZP3
Genetic variants : HAPMAP22932
Genomic Variants (DGV)POMZP3 [DGVbeta]
DECIPHERPOMZP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOMZP3 
Mutations
ICGC Data PortalPOMZP3 
TCGA Data PortalPOMZP3 
Broad Tumor PortalPOMZP3
OASIS PortalPOMZP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOMZP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOMZP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POMZP3
DgiDB (Drug Gene Interaction Database)POMZP3
DoCM (Curated mutations)POMZP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POMZP3 (select a term)
intoGenPOMZP3
Cancer3DPOMZP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600587   
Orphanet
DisGeNETPOMZP3
MedgenPOMZP3
Genetic Testing Registry POMZP3
NextProtQ6PJE2 [Medical]
TSGene22932
GENETestsPOMZP3
Target ValidationPOMZP3
Huge Navigator POMZP3 [HugePedia]
snp3D : Map Gene to Disease22932
BioCentury BCIQPOMZP3
ClinGenPOMZP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22932
Chemical/Pharm GKB GenePA33528
Clinical trialPOMZP3
Miscellaneous
canSAR (ICR)POMZP3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOMZP3
EVEXPOMZP3
GoPubMedPOMZP3
iHOPPOMZP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 6 11:31:17 CET 2018

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