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POP5 (POP5 homolog, ribonuclease P/MRP subunit)

Identity

Alias_namesprocessing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)
Other aliasHSPC004
RPP2
RPP20
hPop5
HGNC (Hugo) POP5
LocusID (NCBI) 51367
Atlas_Id 72076
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120579045 and ends at 120581394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAPK14 (6p21.31) / POP5 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POP5   17689
Cards
Entrez_Gene (NCBI)POP5  51367  POP5 homolog, ribonuclease P/MRP subunit
AliasesHSPC004; RPP2; RPP20; hPop5
GeneCards (Weizmann)POP5
Ensembl hg19 (Hinxton)ENSG00000167272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167272 [Gene_View]  chr12:120579045-120581394 [Contig_View]  POP5 [Vega]
ICGC DataPortalENSG00000167272
TCGA cBioPortalPOP5
AceView (NCBI)POP5
Genatlas (Paris)POP5
WikiGenes51367
SOURCE (Princeton)POP5
Genetics Home Reference (NIH)POP5
Genomic and cartography
GoldenPath hg38 (UCSC)POP5  -     chr12:120579045-120581394 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POP5  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblPOP5 - 12q24.31 [CytoView hg19]  POP5 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIPOP5 [Mapview hg19]  POP5 [Mapview hg38]
OMIM609992   
Gene and transcription
Genbank (Entrez)AA918619 AF070660 AF117232 AJ306296 AK223206
RefSeq transcript (Entrez)NM_015918 NM_198201 NM_198202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POP5
Cluster EST : UnigeneHs.279913 [ NCBI ]
CGAP (NCI)Hs.279913
Alternative Splicing GalleryENSG00000167272
Gene ExpressionPOP5 [ NCBI-GEO ]   POP5 [ EBI - ARRAY_EXPRESS ]   POP5 [ SEEK ]   POP5 [ MEM ]
Gene Expression Viewer (FireBrowse)POP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51367
GTEX Portal (Tissue expression)POP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969H6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969H6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969H6
Splice isoforms : SwissVarQ969H6
PhosPhoSitePlusQ969H6
Domains : Interpro (EBI)RNase_P/MRP_POP5    RNase_P/MRP_subunit   
Domain families : Pfam (Sanger)RNase_P_Rpp14 (PF01900)   
Domain families : Pfam (NCBI)pfam01900   
Conserved Domain (NCBI)POP5
DMDM Disease mutations51367
Blocks (Seattle)POP5
SuperfamilyQ969H6
Human Protein AtlasENSG00000167272
Peptide AtlasQ969H6
HPRD15158
IPIIPI00107563   IPI00377084   
Protein Interaction databases
DIP (DOE-UCLA)Q969H6
IntAct (EBI)Q969H6
FunCoupENSG00000167272
BioGRIDPOP5
STRING (EMBL)POP5
ZODIACPOP5
Ontologies - Pathways
QuickGOQ969H6
Ontology : AmiGOtRNA 5'-leader removal  ribonuclease P activity  protein binding  nucleoplasm  nucleolar ribonuclease P complex  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBItRNA 5'-leader removal  ribonuclease P activity  protein binding  nucleoplasm  nucleolar ribonuclease P complex  RNA phosphodiester bond hydrolysis, endonucleolytic  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkPOP5
Atlas of Cancer Signalling NetworkPOP5
Wikipedia pathwaysPOP5
Orthology - Evolution
OrthoDB51367
GeneTree (enSembl)ENSG00000167272
Phylogenetic Trees/Animal Genes : TreeFamPOP5
HOVERGENQ969H6
HOGENOMQ969H6
Homologs : HomoloGenePOP5
Homology/Alignments : Family Browser (UCSC)POP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POP5
dbVarPOP5
ClinVarPOP5
1000_GenomesPOP5 
Exome Variant ServerPOP5
ExAC (Exome Aggregation Consortium)POP5 (select the gene name)
Genetic variants : HAPMAP51367
Genomic Variants (DGV)POP5 [DGVbeta]
DECIPHERPOP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOP5 
Mutations
ICGC Data PortalPOP5 
TCGA Data PortalPOP5 
Broad Tumor PortalPOP5
OASIS PortalPOP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POP5
DgiDB (Drug Gene Interaction Database)POP5
DoCM (Curated mutations)POP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POP5 (select a term)
intoGenPOP5
Cancer3DPOP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609992   
Orphanet
MedgenPOP5
Genetic Testing Registry POP5
NextProtQ969H6 [Medical]
TSGene51367
GENETestsPOP5
Target ValidationPOP5
Huge Navigator POP5 [HugePedia]
snp3D : Map Gene to Disease51367
BioCentury BCIQPOP5
ClinGenPOP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51367
Chemical/Pharm GKB GenePA128394660
Clinical trialPOP5
Miscellaneous
canSAR (ICR)POP5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOP5
EVEXPOP5
GoPubMedPOP5
iHOPPOP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:57 CEST 2017

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