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POP7 (POP7 homolog, ribonuclease P/MRP subunit)

Identity

Alias_namesprocessing of precursor 7, ribonuclease P subunit (S. cerevisiae)
processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)
Alias_symbol (synonym)RPP20
RPP2
Other alias0610037N12Rik
HGNC (Hugo) POP7
LocusID (NCBI) 10248
Atlas_Id 72077
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100706053 and ends at 100707500 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POP7   19949
Cards
Entrez_Gene (NCBI)POP7  10248  POP7 homolog, ribonuclease P/MRP subunit
Aliases0610037N12Rik; RPP2; RPP20
GeneCards (Weizmann)POP7
Ensembl hg19 (Hinxton)ENSG00000172336 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172336 [Gene_View]  chr7:100706053-100707500 [Contig_View]  POP7 [Vega]
ICGC DataPortalENSG00000172336
TCGA cBioPortalPOP7
AceView (NCBI)POP7
Genatlas (Paris)POP7
WikiGenes10248
SOURCE (Princeton)POP7
Genetics Home Reference (NIH)POP7
Genomic and cartography
GoldenPath hg38 (UCSC)POP7  -     chr7:100706053-100707500 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POP7  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblPOP7 - 7q22.1 [CytoView hg19]  POP7 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIPOP7 [Mapview hg19]  POP7 [Mapview hg38]
OMIM606113   
Gene and transcription
Genbank (Entrez)AJ572668 BC001430 BI666854 U94316
RefSeq transcript (Entrez)NM_005837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POP7
Cluster EST : UnigeneHs.416994 [ NCBI ]
CGAP (NCI)Hs.416994
Alternative Splicing GalleryENSG00000172336
Gene ExpressionPOP7 [ NCBI-GEO ]   POP7 [ EBI - ARRAY_EXPRESS ]   POP7 [ SEEK ]   POP7 [ MEM ]
Gene Expression Viewer (FireBrowse)POP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10248
GTEX Portal (Tissue expression)POP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75817   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75817  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75817
Splice isoforms : SwissVarO75817
Catalytic activity : Enzyme3.1.26.5 [ Enzyme-Expasy ]   3.1.26.53.1.26.5 [ IntEnz-EBI ]   3.1.26.5 [ BRENDA ]   3.1.26.5 [ KEGG ]   
PhosPhoSitePlusO75817
Domains : Interpro (EBI)DNA/RNA-bd_Alba-like    Pop7/Rpp20   
Domain families : Pfam (Sanger)Rpp20 (PF12328)   
Domain families : Pfam (NCBI)pfam12328   
Conserved Domain (NCBI)POP7
DMDM Disease mutations10248
Blocks (Seattle)POP7
SuperfamilyO75817
Human Protein AtlasENSG00000172336
Peptide AtlasO75817
HPRD09357
IPIIPI00027142   IPI00927698   
Protein Interaction databases
DIP (DOE-UCLA)O75817
IntAct (EBI)O75817
FunCoupENSG00000172336
BioGRIDPOP7
STRING (EMBL)POP7
ZODIACPOP7
Ontologies - Pathways
QuickGOO75817
Ontology : AmiGOtRNA 5'-leader removal  RNA binding  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  cytoplasm  tRNA processing  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBItRNA 5'-leader removal  RNA binding  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  cytoplasm  tRNA processing  RNA phosphodiester bond hydrolysis, endonucleolytic  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkPOP7
Atlas of Cancer Signalling NetworkPOP7
Wikipedia pathwaysPOP7
Orthology - Evolution
OrthoDB10248
GeneTree (enSembl)ENSG00000172336
Phylogenetic Trees/Animal Genes : TreeFamPOP7
HOVERGENO75817
HOGENOMO75817
Homologs : HomoloGenePOP7
Homology/Alignments : Family Browser (UCSC)POP7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POP7
dbVarPOP7
ClinVarPOP7
1000_GenomesPOP7 
Exome Variant ServerPOP7
ExAC (Exome Aggregation Consortium)POP7 (select the gene name)
Genetic variants : HAPMAP10248
Genomic Variants (DGV)POP7 [DGVbeta]
DECIPHERPOP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOP7 
Mutations
ICGC Data PortalPOP7 
TCGA Data PortalPOP7 
Broad Tumor PortalPOP7
OASIS PortalPOP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POP7
DgiDB (Drug Gene Interaction Database)POP7
DoCM (Curated mutations)POP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POP7 (select a term)
intoGenPOP7
Cancer3DPOP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606113   
Orphanet
MedgenPOP7
Genetic Testing Registry POP7
NextProtO75817 [Medical]
TSGene10248
GENETestsPOP7
Target ValidationPOP7
Huge Navigator POP7 [HugePedia]
snp3D : Map Gene to Disease10248
BioCentury BCIQPOP7
ClinGenPOP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10248
Chemical/Pharm GKB GenePA134887425
Clinical trialPOP7
Miscellaneous
canSAR (ICR)POP7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOP7
EVEXPOP7
GoPubMedPOP7
iHOPPOP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:55 CEST 2017

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