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POPDC2 (popeye domain containing 2)

Identity

Alias_symbol (synonym)POP2
Other alias
HGNC (Hugo) POPDC2
LocusID (NCBI) 64091
Atlas_Id 41786
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 119360899 and ends at 119379437 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POPDC2   17648
Cards
Entrez_Gene (NCBI)POPDC2  64091  popeye domain containing 2
AliasesPOP2
GeneCards (Weizmann)POPDC2
Ensembl hg19 (Hinxton)ENSG00000121577 [Gene_View]  chr3:119360899-119379437 [Contig_View]  POPDC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121577 [Gene_View]  chr3:119360899-119379437 [Contig_View]  POPDC2 [Vega]
ICGC DataPortalENSG00000121577
TCGA cBioPortalPOPDC2
AceView (NCBI)POPDC2
Genatlas (Paris)POPDC2
WikiGenes64091
SOURCE (Princeton)POPDC2
Genetics Home Reference (NIH)POPDC2
Genomic and cartography
GoldenPath hg19 (UCSC)POPDC2  -     chr3:119360899-119379437 -  3q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POPDC2  -     3q13.33   [Description]    (hg38-Dec_2013)
EnsemblPOPDC2 - 3q13.33 [CytoView hg19]  POPDC2 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIPOPDC2 [Mapview hg19]  POPDC2 [Mapview hg38]
OMIM605823   
Gene and transcription
Genbank (Entrez)AF204173 AK124602 AK226022 AK314819 AK377174
RefSeq transcript (Entrez)NM_001308333 NM_022135
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)POPDC2
Cluster EST : UnigeneHs.656031 [ NCBI ]
CGAP (NCI)Hs.656031
Alternative Splicing GalleryENSG00000121577
Gene ExpressionPOPDC2 [ NCBI-GEO ]   POPDC2 [ EBI - ARRAY_EXPRESS ]   POPDC2 [ SEEK ]   POPDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)POPDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64091
GTEX Portal (Tissue expression)POPDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBU9
Splice isoforms : SwissVarQ9HBU9
PhosPhoSitePlusQ9HBU9
Domains : Interpro (EBI)cNMP-bd-like    Popeye_prot   
Domain families : Pfam (Sanger)Popeye (PF04831)   
Domain families : Pfam (NCBI)pfam04831   
Conserved Domain (NCBI)POPDC2
DMDM Disease mutations64091
Blocks (Seattle)POPDC2
SuperfamilyQ9HBU9
Human Protein AtlasENSG00000121577
Peptide AtlasQ9HBU9
HPRD16160
IPIIPI00328717   IPI00387163   IPI00945520   IPI00945019   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBU9
IntAct (EBI)Q9HBU9
FunCoupENSG00000121577
BioGRIDPOPDC2
STRING (EMBL)POPDC2
ZODIACPOPDC2
Ontologies - Pathways
QuickGOQ9HBU9
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  sarcolemma  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  sarcolemma  
NDEx NetworkPOPDC2
Atlas of Cancer Signalling NetworkPOPDC2
Wikipedia pathwaysPOPDC2
Orthology - Evolution
OrthoDB64091
GeneTree (enSembl)ENSG00000121577
Phylogenetic Trees/Animal Genes : TreeFamPOPDC2
HOVERGENQ9HBU9
HOGENOMQ9HBU9
Homologs : HomoloGenePOPDC2
Homology/Alignments : Family Browser (UCSC)POPDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOPDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POPDC2
dbVarPOPDC2
ClinVarPOPDC2
1000_GenomesPOPDC2 
Exome Variant ServerPOPDC2
ExAC (Exome Aggregation Consortium)POPDC2 (select the gene name)
Genetic variants : HAPMAP64091
Genomic Variants (DGV)POPDC2 [DGVbeta]
DECIPHER (Syndromes)3:119360899-119379437  ENSG00000121577
CONAN: Copy Number AnalysisPOPDC2 
Mutations
ICGC Data PortalPOPDC2 
TCGA Data PortalPOPDC2 
Broad Tumor PortalPOPDC2
OASIS PortalPOPDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOPDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOPDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POPDC2
DgiDB (Drug Gene Interaction Database)POPDC2
DoCM (Curated mutations)POPDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POPDC2 (select a term)
intoGenPOPDC2
Cancer3DPOPDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605823   
Orphanet
MedgenPOPDC2
Genetic Testing Registry POPDC2
NextProtQ9HBU9 [Medical]
TSGene64091
GENETestsPOPDC2
Huge Navigator POPDC2 [HugePedia]
snp3D : Map Gene to Disease64091
BioCentury BCIQPOPDC2
ClinGenPOPDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64091
Chemical/Pharm GKB GenePA134982197
Clinical trialPOPDC2
Miscellaneous
canSAR (ICR)POPDC2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOPDC2
EVEXPOPDC2
GoPubMedPOPDC2
iHOPPOPDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:05 CEST 2017

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