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POPDC3 (popeye domain containing 3)

Identity

Alias_symbol (synonym)POP3
MGC22671
bA355M14.1
Other alias
HGNC (Hugo) POPDC3
LocusID (NCBI) 64208
Atlas_Id 51716
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 105157900 and ends at 105179983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POPDC3   17649
Cards
Entrez_Gene (NCBI)POPDC3  64208  popeye domain containing 3
AliasesPOP3; bA355M14.1
GeneCards (Weizmann)POPDC3
Ensembl hg19 (Hinxton)ENSG00000132429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132429 [Gene_View]  ENSG00000132429 [Sequence]  chr6:105157900-105179983 [Contig_View]  POPDC3 [Vega]
ICGC DataPortalENSG00000132429
TCGA cBioPortalPOPDC3
AceView (NCBI)POPDC3
Genatlas (Paris)POPDC3
WikiGenes64208
SOURCE (Princeton)POPDC3
Genetics Home Reference (NIH)POPDC3
Genomic and cartography
GoldenPath hg38 (UCSC)POPDC3  -     chr6:105157900-105179983 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POPDC3  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblPOPDC3 - 6q21 [CytoView hg19]  POPDC3 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIPOPDC3 [Mapview hg19]  POPDC3 [Mapview hg38]
OMIM605824   
Gene and transcription
Genbank (Entrez)AF204171 AK225989 AK314101 BC022323 BF244570
RefSeq transcript (Entrez)NM_022361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POPDC3
Cluster EST : UnigeneHs.458336 [ NCBI ]
CGAP (NCI)Hs.458336
Alternative Splicing GalleryENSG00000132429
Gene ExpressionPOPDC3 [ NCBI-GEO ]   POPDC3 [ EBI - ARRAY_EXPRESS ]   POPDC3 [ SEEK ]   POPDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)POPDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64208
GTEX Portal (Tissue expression)POPDC3
Human Protein AtlasENSG00000132429-POPDC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBV1
Splice isoforms : SwissVarQ9HBV1
PhosPhoSitePlusQ9HBV1
Domains : Interpro (EBI)cNMP-bd-like    Popeye_prot   
Domain families : Pfam (Sanger)Popeye (PF04831)   
Domain families : Pfam (NCBI)pfam04831   
Conserved Domain (NCBI)POPDC3
DMDM Disease mutations64208
Blocks (Seattle)POPDC3
SuperfamilyQ9HBV1
Human Protein Atlas [tissue]ENSG00000132429-POPDC3 [tissue]
Peptide AtlasQ9HBV1
HPRD16161
IPIIPI00154666   IPI00514499   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBV1
IntAct (EBI)Q9HBV1
FunCoupENSG00000132429
BioGRIDPOPDC3
STRING (EMBL)POPDC3
ZODIACPOPDC3
Ontologies - Pathways
QuickGOQ9HBV1
Ontology : AmiGOmolecular_function  heart development  skeletal muscle tissue development  biological_process  membrane  integral component of membrane  cAMP binding  cAMP binding  sarcolemma  regulation of membrane potential  regulation of membrane potential  
Ontology : EGO-EBImolecular_function  heart development  skeletal muscle tissue development  biological_process  membrane  integral component of membrane  cAMP binding  cAMP binding  sarcolemma  regulation of membrane potential  regulation of membrane potential  
NDEx NetworkPOPDC3
Atlas of Cancer Signalling NetworkPOPDC3
Wikipedia pathwaysPOPDC3
Orthology - Evolution
OrthoDB64208
GeneTree (enSembl)ENSG00000132429
Phylogenetic Trees/Animal Genes : TreeFamPOPDC3
HOVERGENQ9HBV1
HOGENOMQ9HBV1
Homologs : HomoloGenePOPDC3
Homology/Alignments : Family Browser (UCSC)POPDC3
Gene fusions - Rearrangements
Fusion : QuiverPOPDC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOPDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POPDC3
dbVarPOPDC3
ClinVarPOPDC3
1000_GenomesPOPDC3 
Exome Variant ServerPOPDC3
ExAC (Exome Aggregation Consortium)ENSG00000132429
GNOMAD BrowserENSG00000132429
Varsome BrowserPOPDC3
Genetic variants : HAPMAP64208
Genomic Variants (DGV)POPDC3 [DGVbeta]
DECIPHERPOPDC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOPDC3 
Mutations
ICGC Data PortalPOPDC3 
TCGA Data PortalPOPDC3 
Broad Tumor PortalPOPDC3
OASIS PortalPOPDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOPDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOPDC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POPDC3
DgiDB (Drug Gene Interaction Database)POPDC3
DoCM (Curated mutations)POPDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POPDC3 (select a term)
intoGenPOPDC3
Cancer3DPOPDC3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605824   
Orphanet
DisGeNETPOPDC3
MedgenPOPDC3
Genetic Testing Registry POPDC3
NextProtQ9HBV1 [Medical]
TSGene64208
GENETestsPOPDC3
Target ValidationPOPDC3
Huge Navigator POPDC3 [HugePedia]
snp3D : Map Gene to Disease64208
BioCentury BCIQPOPDC3
ClinGenPOPDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64208
Chemical/Pharm GKB GenePA134935151
Clinical trialPOPDC3
Miscellaneous
canSAR (ICR)POPDC3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOPDC3
EVEXPOPDC3
GoPubMedPOPDC3
iHOPPOPDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:31:19 CET 2018

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