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POTEB3 (POTE ankyrin domain family member B3)

Identity

Alias_namesPOTE ankyrin domain family, member B3
Other aliasPOTE-15
POTEB
HGNC (Hugo) POTEB3
LocusID (NCBI) 102724631
Atlas_Id 72082
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 21408964 and ends at 21440382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEB3   51240
Cards
Entrez_Gene (NCBI)POTEB3  102724631  POTE ankyrin domain family member B3
AliasesPOTE-15; POTEB
GeneCards (Weizmann)POTEB3
Ensembl hg19 (Hinxton)ENSG00000278522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278522 [Gene_View]  chr15:21408964-21440382 [Contig_View]  POTEB3 [Vega]
ICGC DataPortalENSG00000278522
TCGA cBioPortalPOTEB3
AceView (NCBI)POTEB3
Genatlas (Paris)POTEB3
WikiGenes102724631
SOURCE (Princeton)POTEB3
Genetics Home Reference (NIH)POTEB3
Genomic and cartography
GoldenPath hg38 (UCSC)POTEB3  -     chr15:21408964-21440382 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTEB3  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblPOTEB3 - 15q11.2 [CytoView hg19]  POTEB3 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIPOTEB3 [Mapview hg19]  POTEB3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY465170 AY465173 BC066981 BC101005 BC101006
RefSeq transcript (Entrez)NM_207355
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187602
Consensus coding sequences : CCDS (NCBI)POTEB3
Cluster EST : UnigeneHs.742365 [ NCBI ]
CGAP (NCI)Hs.742365
Alternative Splicing GalleryENSG00000278522
Gene ExpressionPOTEB3 [ NCBI-GEO ]   POTEB3 [ EBI - ARRAY_EXPRESS ]   POTEB3 [ SEEK ]   POTEB3 [ MEM ]
Gene Expression Viewer (FireBrowse)POTEB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724631
GTEX Portal (Tissue expression)POTEB3
Human Protein AtlasENSG00000278522-POTEB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0JP26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0JP26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0JP26
Splice isoforms : SwissVarA0JP26
PhosPhoSitePlusA0JP26
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)POTEB3
DMDM Disease mutations102724631
Blocks (Seattle)POTEB3
SuperfamilyA0JP26
Human Protein Atlas [tissue]ENSG00000278522-POTEB3 [tissue]
Peptide AtlasA0JP26
Protein Interaction databases
DIP (DOE-UCLA)A0JP26
IntAct (EBI)A0JP26
FunCoupENSG00000278522
BioGRIDPOTEB3
STRING (EMBL)POTEB3
ZODIACPOTEB3
Ontologies - Pathways
QuickGOA0JP26
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPOTEB3
Atlas of Cancer Signalling NetworkPOTEB3
Wikipedia pathwaysPOTEB3
Orthology - Evolution
OrthoDB102724631
GeneTree (enSembl)ENSG00000278522
Phylogenetic Trees/Animal Genes : TreeFamPOTEB3
HOVERGENA0JP26
HOGENOMA0JP26
Homologs : HomoloGenePOTEB3
Homology/Alignments : Family Browser (UCSC)POTEB3
Gene fusions - Rearrangements
Tumor Fusion PortalPOTEB3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEB3
dbVarPOTEB3
ClinVarPOTEB3
1000_GenomesPOTEB3 
Exome Variant ServerPOTEB3
ExAC (Exome Aggregation Consortium)ENSG00000278522
GNOMAD BrowserENSG00000278522
Genetic variants : HAPMAP102724631
Genomic Variants (DGV)POTEB3 [DGVbeta]
DECIPHERPOTEB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTEB3 
Mutations
ICGC Data PortalPOTEB3 
TCGA Data PortalPOTEB3 
Broad Tumor PortalPOTEB3
OASIS PortalPOTEB3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOTEB3
BioMutasearch POTEB3
DgiDB (Drug Gene Interaction Database)POTEB3
DoCM (Curated mutations)POTEB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEB3 (select a term)
intoGenPOTEB3
Cancer3DPOTEB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPOTEB3
MedgenPOTEB3
Genetic Testing Registry POTEB3
NextProtA0JP26 [Medical]
TSGene102724631
GENETestsPOTEB3
Target ValidationPOTEB3
Huge Navigator POTEB3 [HugePedia]
snp3D : Map Gene to Disease102724631
BioCentury BCIQPOTEB3
ClinGenPOTEB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724631
Chemical/Pharm GKB GenePA166123725
Clinical trialPOTEB3
Miscellaneous
canSAR (ICR)POTEB3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEB3
EVEXPOTEB3
GoPubMedPOTEB3
iHOPPOTEB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:02 CET 2017

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