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POTEC (POTE ankyrin domain family, member C)

Identity

Alias_namesA26B2
ANKRD26-like family B, member 2
POTE ankyrin domain family, member C
Alias_symbol (synonym)POTE18
POTE-18
DKFZp686J0529
CT104.6
Other alias
HGNC (Hugo) POTEC
LocusID (NCBI) 388468
Atlas_Id 72083
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 14511737 and ends at 14543599 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEC   33894
Cards
Entrez_Gene (NCBI)POTEC  388468  POTE ankyrin domain family, member C
AliasesA26B2; CT104.6; POTE-18; POTE18
GeneCards (Weizmann)POTEC
Ensembl hg19 (Hinxton)ENSG00000183206 [Gene_View]  chr18:14511737-14543599 [Contig_View]  POTEC [Vega]
Ensembl hg38 (Hinxton)ENSG00000183206 [Gene_View]  chr18:14511737-14543599 [Contig_View]  POTEC [Vega]
ICGC DataPortalENSG00000183206
TCGA cBioPortalPOTEC
AceView (NCBI)POTEC
Genatlas (Paris)POTEC
WikiGenes388468
SOURCE (Princeton)POTEC
Genetics Home Reference (NIH)POTEC
Genomic and cartography
GoldenPath hg19 (UCSC)POTEC  -     chr18:14511737-14543599 -  18p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POTEC  -     18p11.21   [Description]    (hg38-Dec_2013)
EnsemblPOTEC - 18p11.21 [CytoView hg19]  POTEC - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIPOTEC [Mapview hg19]  POTEC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307658 BC140940 BX649118
RefSeq transcript (Entrez)NM_001137671
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)POTEC
Cluster EST : UnigeneHs.454726 [ NCBI ]
CGAP (NCI)Hs.454726
Alternative Splicing GalleryENSG00000183206
Gene ExpressionPOTEC [ NCBI-GEO ]   POTEC [ EBI - ARRAY_EXPRESS ]   POTEC [ SEEK ]   POTEC [ MEM ]
Gene Expression Viewer (FireBrowse)POTEC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388468
GTEX Portal (Tissue expression)POTEC
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RU33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RU33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RU33
Splice isoforms : SwissVarB2RU33
PhosPhoSitePlusB2RU33
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)POTEC
DMDM Disease mutations388468
Blocks (Seattle)POTEC
SuperfamilyB2RU33
Human Protein AtlasENSG00000183206
Peptide AtlasB2RU33
IPIIPI00915457   IPI00964539   
Protein Interaction databases
DIP (DOE-UCLA)B2RU33
IntAct (EBI)B2RU33
FunCoupENSG00000183206
BioGRIDPOTEC
STRING (EMBL)POTEC
ZODIACPOTEC
Ontologies - Pathways
QuickGOB2RU33
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPOTEC
Atlas of Cancer Signalling NetworkPOTEC
Wikipedia pathwaysPOTEC
Orthology - Evolution
OrthoDB388468
GeneTree (enSembl)ENSG00000183206
Phylogenetic Trees/Animal Genes : TreeFamPOTEC
HOVERGENB2RU33
HOGENOMB2RU33
Homologs : HomoloGenePOTEC
Homology/Alignments : Family Browser (UCSC)POTEC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEC
dbVarPOTEC
ClinVarPOTEC
1000_GenomesPOTEC 
Exome Variant ServerPOTEC
ExAC (Exome Aggregation Consortium)POTEC (select the gene name)
Genetic variants : HAPMAP388468
Genomic Variants (DGV)POTEC [DGVbeta]
DECIPHER (Syndromes)18:14511737-14543599  ENSG00000183206
CONAN: Copy Number AnalysisPOTEC 
Mutations
ICGC Data PortalPOTEC 
TCGA Data PortalPOTEC 
Broad Tumor PortalPOTEC
OASIS PortalPOTEC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTEC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOTEC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEC
DgiDB (Drug Gene Interaction Database)POTEC
DoCM (Curated mutations)POTEC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEC (select a term)
intoGenPOTEC
Cancer3DPOTEC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOTEC
Genetic Testing Registry POTEC
NextProtB2RU33 [Medical]
TSGene388468
GENETestsPOTEC
Huge Navigator POTEC [HugePedia]
snp3D : Map Gene to Disease388468
BioCentury BCIQPOTEC
ClinGenPOTEC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388468
Chemical/Pharm GKB GenePA164724729
Clinical trialPOTEC
Miscellaneous
canSAR (ICR)POTEC (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEC
EVEXPOTEC
GoPubMedPOTEC
iHOPPOTEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:14 CET 2017

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