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POTED (POTE ankyrin domain family, member D)

Identity

Alias_namesANKRD21
A26B3
ankyrin repeat domain 21
ANKRD26-like family B, member 3
POTE ankyrin domain family, member D
Alias_symbol (synonym)POTE
POTE-21
POTE21
CT104.1
Other alias
HGNC (Hugo) POTED
LocusID (NCBI) 317754
Atlas_Id 72084
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 14982498 and ends at 15013906 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTED   23822
Cards
Entrez_Gene (NCBI)POTED  317754  POTE ankyrin domain family, member D
AliasesA26B3; ANKRD21; CT104.1; POTE; 
POTE-21; POTE21
GeneCards (Weizmann)POTED
Ensembl hg19 (Hinxton)ENSG00000166351 [Gene_View]  chr21:14982498-15013906 [Contig_View]  POTED [Vega]
Ensembl hg38 (Hinxton)ENSG00000166351 [Gene_View]  chr21:14982498-15013906 [Contig_View]  POTED [Vega]
ICGC DataPortalENSG00000166351
TCGA cBioPortalPOTED
AceView (NCBI)POTED
Genatlas (Paris)POTED
WikiGenes317754
SOURCE (Princeton)POTED
Genetics Home Reference (NIH)POTED
Genomic and cartography
GoldenPath hg19 (UCSC)POTED  -     chr21:14982498-15013906 +  21q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POTED  -     21q11.2   [Description]    (hg38-Dec_2013)
EnsemblPOTED - 21q11.2 [CytoView hg19]  POTED - 21q11.2 [CytoView hg38]
Mapping of homologs : NCBIPOTED [Mapview hg19]  POTED [Mapview hg38]
OMIM607549   
Gene and transcription
Genbank (Entrez)BC166701
RefSeq transcript (Entrez)NM_174981
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)POTED
Cluster EST : UnigeneHs.742365 [ NCBI ]
CGAP (NCI)Hs.742365
Alternative Splicing GalleryENSG00000166351
Gene ExpressionPOTED [ NCBI-GEO ]   POTED [ EBI - ARRAY_EXPRESS ]   POTED [ SEEK ]   POTED [ MEM ]
Gene Expression Viewer (FireBrowse)POTED [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317754
GTEX Portal (Tissue expression)POTED
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YR6
Splice isoforms : SwissVarQ86YR6
PhosPhoSitePlusQ86YR6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)POTED
DMDM Disease mutations317754
Blocks (Seattle)POTED
SuperfamilyQ86YR6
Human Protein AtlasENSG00000166351
Peptide AtlasQ86YR6
HPRD09612
IPIIPI00953961   
Protein Interaction databases
DIP (DOE-UCLA)Q86YR6
IntAct (EBI)Q86YR6
FunCoupENSG00000166351
BioGRIDPOTED
STRING (EMBL)POTED
ZODIACPOTED
Ontologies - Pathways
QuickGOQ86YR6
Ontology : AmiGOplasma membrane  
Ontology : EGO-EBIplasma membrane  
NDEx NetworkPOTED
Atlas of Cancer Signalling NetworkPOTED
Wikipedia pathwaysPOTED
Orthology - Evolution
OrthoDB317754
GeneTree (enSembl)ENSG00000166351
Phylogenetic Trees/Animal Genes : TreeFamPOTED
HOVERGENQ86YR6
HOGENOMQ86YR6
Homologs : HomoloGenePOTED
Homology/Alignments : Family Browser (UCSC)POTED
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTED [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTED
dbVarPOTED
ClinVarPOTED
1000_GenomesPOTED 
Exome Variant ServerPOTED
ExAC (Exome Aggregation Consortium)POTED (select the gene name)
Genetic variants : HAPMAP317754
Genomic Variants (DGV)POTED [DGVbeta]
DECIPHER (Syndromes)21:14982498-15013906  ENSG00000166351
CONAN: Copy Number AnalysisPOTED 
Mutations
ICGC Data PortalPOTED 
TCGA Data PortalPOTED 
Broad Tumor PortalPOTED
OASIS PortalPOTED [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTED  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOTED
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTED
DgiDB (Drug Gene Interaction Database)POTED
DoCM (Curated mutations)POTED (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTED (select a term)
intoGenPOTED
Cancer3DPOTED(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607549   
Orphanet
MedgenPOTED
Genetic Testing Registry POTED
NextProtQ86YR6 [Medical]
TSGene317754
GENETestsPOTED
Huge Navigator POTED [HugePedia]
snp3D : Map Gene to Disease317754
BioCentury BCIQPOTED
ClinGenPOTED
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317754
Chemical/Pharm GKB GenePA164724756
Clinical trialPOTED
Miscellaneous
canSAR (ICR)POTED (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTED
EVEXPOTED
GoPubMedPOTED
iHOPPOTED
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:14 CET 2017

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