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POTEE (POTE ankyrin domain family member E)

Identity

Alias_namesmember 2
A26C1A
Alias_symbol (synonym)POTE2
POTE-2
A26C1
POTE2gamma
CT104.2
Other alias
HGNC (Hugo) POTEE
LocusID (NCBI) 445582
Atlas_Id 55509
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 131975924 and ends at 132022416 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEE   33895
Cards
Entrez_Gene (NCBI)POTEE  445582  POTE ankyrin domain family member E
AliasesA26C1; A26C1A; CT104.2; POTE-2; 
POTE2; POTE2gamma
GeneCards (Weizmann)POTEE
Ensembl hg19 (Hinxton)ENSG00000188219 [Gene_View]  chr2:131975924-132022416 [Contig_View]  POTEE [Vega]
Ensembl hg38 (Hinxton)ENSG00000188219 [Gene_View]  chr2:131975924-132022416 [Contig_View]  POTEE [Vega]
ICGC DataPortalENSG00000188219
TCGA cBioPortalPOTEE
AceView (NCBI)POTEE
Genatlas (Paris)POTEE
WikiGenes445582
SOURCE (Princeton)POTEE
Genetics Home Reference (NIH)POTEE
Genomic and cartography
GoldenPath hg19 (UCSC)POTEE  -     chr2:131975924-132022416 +  2q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)POTEE  -     2q21.1   [Description]    (hg38-Dec_2013)
EnsemblPOTEE - 2q21.1 [CytoView hg19]  POTEE - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIPOTEE [Mapview hg19]  POTEE [Mapview hg38]
OMIM608914   
Gene and transcription
Genbank (Entrez)AY462868 AY462871 AY462872 AY462873 HM358964
RefSeq transcript (Entrez)NM_001004054 NM_001005359 NM_001005364 NM_001083538
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)POTEE
Cluster EST : UnigeneHs.686146 [ NCBI ]
CGAP (NCI)Hs.686146
Alternative Splicing GalleryENSG00000188219
Gene ExpressionPOTEE [ NCBI-GEO ]   POTEE [ EBI - ARRAY_EXPRESS ]   POTEE [ SEEK ]   POTEE [ MEM ]
Gene Expression Viewer (FireBrowse)POTEE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)445582
GTEX Portal (Tissue expression)POTEE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6S8J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6S8J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6S8J3
Splice isoforms : SwissVarQ6S8J3
PhosPhoSitePlusQ6S8J3
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)    ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS    Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Actin (PF00022)    Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00022    pfam00023    pfam12796   
Domain families : Smart (EMBL)ACTIN (SM00268)  ANK (SM00248)  
Conserved Domain (NCBI)POTEE
DMDM Disease mutations445582
Blocks (Seattle)POTEE
SuperfamilyQ6S8J3
Human Protein AtlasENSG00000188219
Peptide AtlasQ6S8J3
HPRD12329
IPIIPI00479743   IPI00470363   IPI00970972   IPI00970917   IPI00867651   
Protein Interaction databases
DIP (DOE-UCLA)Q6S8J3
IntAct (EBI)Q6S8J3
FunCoupENSG00000188219
BioGRIDPOTEE
STRING (EMBL)POTEE
ZODIACPOTEE
Ontologies - Pathways
QuickGOQ6S8J3
Ontology : AmiGOretina homeostasis  molecular_function  extracellular space  substantia nigra development  extracellular exosome  blood microparticle  
Ontology : EGO-EBIretina homeostasis  molecular_function  extracellular space  substantia nigra development  extracellular exosome  blood microparticle  
NDEx NetworkPOTEE
Atlas of Cancer Signalling NetworkPOTEE
Wikipedia pathwaysPOTEE
Orthology - Evolution
OrthoDB445582
GeneTree (enSembl)ENSG00000188219
Phylogenetic Trees/Animal Genes : TreeFamPOTEE
HOVERGENQ6S8J3
HOGENOMQ6S8J3
Homologs : HomoloGenePOTEE
Homology/Alignments : Family Browser (UCSC)POTEE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEE
dbVarPOTEE
ClinVarPOTEE
1000_GenomesPOTEE 
Exome Variant ServerPOTEE
ExAC (Exome Aggregation Consortium)POTEE (select the gene name)
Genetic variants : HAPMAP445582
Genomic Variants (DGV)POTEE [DGVbeta]
DECIPHER (Syndromes)2:131975924-132022416  ENSG00000188219
CONAN: Copy Number AnalysisPOTEE 
Mutations
ICGC Data PortalPOTEE 
TCGA Data PortalPOTEE 
Broad Tumor PortalPOTEE
OASIS PortalPOTEE [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPOTEE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEE
DgiDB (Drug Gene Interaction Database)POTEE
DoCM (Curated mutations)POTEE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEE (select a term)
intoGenPOTEE
Cancer3DPOTEE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608914   
Orphanet
MedgenPOTEE
Genetic Testing Registry POTEE
NextProtQ6S8J3 [Medical]
TSGene445582
GENETestsPOTEE
Huge Navigator POTEE [HugePedia]
snp3D : Map Gene to Disease445582
BioCentury BCIQPOTEE
ClinGenPOTEE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD445582
Chemical/Pharm GKB GenePA164724783
Clinical trialPOTEE
Miscellaneous
canSAR (ICR)POTEE (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEE
EVEXPOTEE
GoPubMedPOTEE
iHOPPOTEE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:22:17 CET 2017

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