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POTEF (POTE ankyrin domain family member F)

Identity

Alias_namesA26C1B
ANKRD26-like family C, member 1B
POTE ankyrin domain family, member F
Alias_symbol (synonym)POTEACTIN
POTE2alpha
Other aliasACTB
HGNC (Hugo) POTEF
LocusID (NCBI) 728378
Atlas_Id 72086
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130073535 and ends at 130129222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
POTEF (2q21.1) / GLI1 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEF   33905
Cards
Entrez_Gene (NCBI)POTEF  728378  POTE ankyrin domain family member F
AliasesA26C1B; ACTB; POTE2alpha; POTEACTIN
GeneCards (Weizmann)POTEF
Ensembl hg19 (Hinxton)ENSG00000196604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196604 [Gene_View]  chr2:130073535-130129222 [Contig_View]  POTEF [Vega]
ICGC DataPortalENSG00000196604
TCGA cBioPortalPOTEF
AceView (NCBI)POTEF
Genatlas (Paris)POTEF
WikiGenes728378
SOURCE (Princeton)POTEF
Genetics Home Reference (NIH)POTEF
Genomic and cartography
GoldenPath hg38 (UCSC)POTEF  -     chr2:130073535-130129222 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTEF  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblPOTEF - 2q21.1 [CytoView hg19]  POTEF - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIPOTEF [Mapview hg19]  POTEF [Mapview hg38]
Gene and transcription
Genbank (Entrez)EF523384 HM358933 HM358938 HM358957 HM358969
RefSeq transcript (Entrez)NM_001099771
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POTEF
Cluster EST : UnigeneHs.580547 [ NCBI ]
CGAP (NCI)Hs.580547
Alternative Splicing GalleryENSG00000196604
Gene ExpressionPOTEF [ NCBI-GEO ]   POTEF [ EBI - ARRAY_EXPRESS ]   POTEF [ SEEK ]   POTEF [ MEM ]
Gene Expression Viewer (FireBrowse)POTEF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728378
GTEX Portal (Tissue expression)POTEF
Human Protein AtlasENSG00000196604-POTEF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5A3E0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5A3E0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5A3E0
Splice isoforms : SwissVarA5A3E0
PhosPhoSitePlusA5A3E0
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)    ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS    Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Actin (PF00022)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00022    pfam12796   
Domain families : Smart (EMBL)ACTIN (SM00268)  ANK (SM00248)  
Conserved Domain (NCBI)POTEF
DMDM Disease mutations728378
Blocks (Seattle)POTEF
SuperfamilyA5A3E0
Human Protein Atlas [tissue]ENSG00000196604-POTEF [tissue]
Peptide AtlasA5A3E0
IPIIPI00739539   IPI00739095   IPI00935352   IPI01008904   IPI00555874   
Protein Interaction databases
DIP (DOE-UCLA)A5A3E0
IntAct (EBI)A5A3E0
FunCoupENSG00000196604
BioGRIDPOTEF
STRING (EMBL)POTEF
ZODIACPOTEF
Ontologies - Pathways
QuickGOA5A3E0
Ontology : AmiGOretina homeostasis  extracellular space  cell cortex  extracellular exosome  blood microparticle  
Ontology : EGO-EBIretina homeostasis  extracellular space  cell cortex  extracellular exosome  blood microparticle  
NDEx NetworkPOTEF
Atlas of Cancer Signalling NetworkPOTEF
Wikipedia pathwaysPOTEF
Orthology - Evolution
OrthoDB728378
GeneTree (enSembl)ENSG00000196604
Phylogenetic Trees/Animal Genes : TreeFamPOTEF
HOVERGENA5A3E0
HOGENOMA5A3E0
Homologs : HomoloGenePOTEF
Homology/Alignments : Family Browser (UCSC)POTEF
Gene fusions - Rearrangements
Fusion: Tumor Portal POTEF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEF
dbVarPOTEF
ClinVarPOTEF
1000_GenomesPOTEF 
Exome Variant ServerPOTEF
ExAC (Exome Aggregation Consortium)ENSG00000196604
GNOMAD BrowserENSG00000196604
Genetic variants : HAPMAP728378
Genomic Variants (DGV)POTEF [DGVbeta]
DECIPHERPOTEF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTEF 
Mutations
ICGC Data PortalPOTEF 
TCGA Data PortalPOTEF 
Broad Tumor PortalPOTEF
OASIS PortalPOTEF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTEF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOTEF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEF
DgiDB (Drug Gene Interaction Database)POTEF
DoCM (Curated mutations)POTEF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEF (select a term)
intoGenPOTEF
Cancer3DPOTEF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPOTEF
Genetic Testing Registry POTEF
NextProtA5A3E0 [Medical]
TSGene728378
GENETestsPOTEF
Target ValidationPOTEF
Huge Navigator POTEF [HugePedia]
snp3D : Map Gene to Disease728378
BioCentury BCIQPOTEF
ClinGenPOTEF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728378
Chemical/Pharm GKB GenePA164724818
Clinical trialPOTEF
Miscellaneous
canSAR (ICR)POTEF (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEF
EVEXPOTEF
GoPubMedPOTEF
iHOPPOTEF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:09 CET 2017

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