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POTEJ (POTE ankyrin domain family member J)

Identity

Alias_namesPOTE ankyrin domain family, member J
Alias_symbol (synonym)POTE2beta
Other alias
HGNC (Hugo) POTEJ
LocusID (NCBI) 653781
Atlas_Id 72091
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130611533 and ends at 130658037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTEJ   37094
Cards
Entrez_Gene (NCBI)POTEJ  653781  POTE ankyrin domain family member J
AliasesPOTE2beta
GeneCards (Weizmann)POTEJ
Ensembl hg19 (Hinxton)ENSG00000222038 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000222038 [Gene_View]  chr2:130611533-130658037 [Contig_View]  POTEJ [Vega]
ICGC DataPortalENSG00000222038
TCGA cBioPortalPOTEJ
AceView (NCBI)POTEJ
Genatlas (Paris)POTEJ
WikiGenes653781
SOURCE (Princeton)POTEJ
Genetics Home Reference (NIH)POTEJ
Genomic and cartography
GoldenPath hg38 (UCSC)POTEJ  -     chr2:130611533-130658037 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTEJ  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblPOTEJ - 2q21.1 [CytoView hg19]  POTEJ - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIPOTEJ [Mapview hg19]  POTEJ [Mapview hg38]
Gene and transcription
Genbank (Entrez)HM358950 HM358962 HM358992 HM358994
RefSeq transcript (Entrez)NM_001277083
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POTEJ
Cluster EST : UnigeneHs.558829 [ NCBI ]
CGAP (NCI)Hs.558829
Alternative Splicing GalleryENSG00000222038
Gene ExpressionPOTEJ [ NCBI-GEO ]   POTEJ [ EBI - ARRAY_EXPRESS ]   POTEJ [ SEEK ]   POTEJ [ MEM ]
Gene Expression Viewer (FireBrowse)POTEJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653781
GTEX Portal (Tissue expression)POTEJ
Human Protein AtlasENSG00000222038-POTEJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG39
Splice isoforms : SwissVarP0CG39
PhosPhoSitePlusP0CG39
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)    ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS    Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Actin (PF00022)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00022    pfam12796   
Domain families : Smart (EMBL)ACTIN (SM00268)  ANK (SM00248)  
Conserved Domain (NCBI)POTEJ
DMDM Disease mutations653781
Blocks (Seattle)POTEJ
SuperfamilyP0CG39
Human Protein Atlas [tissue]ENSG00000222038-POTEJ [tissue]
Peptide AtlasP0CG39
IPIIPI00738655   
Protein Interaction databases
DIP (DOE-UCLA)P0CG39
IntAct (EBI)P0CG39
FunCoupENSG00000222038
BioGRIDPOTEJ
STRING (EMBL)POTEJ
ZODIACPOTEJ
Ontologies - Pathways
QuickGOP0CG39
Ontology : AmiGOretina homeostasis  extracellular space  extracellular exosome  
Ontology : EGO-EBIretina homeostasis  extracellular space  extracellular exosome  
NDEx NetworkPOTEJ
Atlas of Cancer Signalling NetworkPOTEJ
Wikipedia pathwaysPOTEJ
Orthology - Evolution
OrthoDB653781
GeneTree (enSembl)ENSG00000222038
Phylogenetic Trees/Animal Genes : TreeFamPOTEJ
HOVERGENP0CG39
HOGENOMP0CG39
Homologs : HomoloGenePOTEJ
Homology/Alignments : Family Browser (UCSC)POTEJ
Gene fusions - Rearrangements
Tumor Fusion PortalPOTEJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTEJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTEJ
dbVarPOTEJ
ClinVarPOTEJ
1000_GenomesPOTEJ 
Exome Variant ServerPOTEJ
ExAC (Exome Aggregation Consortium)ENSG00000222038
GNOMAD BrowserENSG00000222038
Genetic variants : HAPMAP653781
Genomic Variants (DGV)POTEJ [DGVbeta]
DECIPHERPOTEJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTEJ 
Mutations
ICGC Data PortalPOTEJ 
TCGA Data PortalPOTEJ 
Broad Tumor PortalPOTEJ
OASIS PortalPOTEJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTEJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPOTEJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTEJ
DgiDB (Drug Gene Interaction Database)POTEJ
DoCM (Curated mutations)POTEJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTEJ (select a term)
intoGenPOTEJ
Cancer3DPOTEJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPOTEJ
MedgenPOTEJ
Genetic Testing Registry POTEJ
NextProtP0CG39 [Medical]
TSGene653781
GENETestsPOTEJ
Target ValidationPOTEJ
Huge Navigator POTEJ [HugePedia]
snp3D : Map Gene to Disease653781
BioCentury BCIQPOTEJ
ClinGenPOTEJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653781
Chemical/Pharm GKB GenePA165697368
Clinical trialPOTEJ
Miscellaneous
canSAR (ICR)POTEJ (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTEJ
EVEXPOTEJ
GoPubMedPOTEJ
iHOPPOTEJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:04 CET 2017

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